Detailed information
Bioinformatically predicted
Overview
| Name | abrB | Type | Regulator |
| Locus tag | BATR1942_RS18060 | Genome accession | NC_014639 |
| Coordinates | 3673410..3673700 (-) | Length | 96 a.a. |
| NCBI ID | WP_087941801.1 | Uniprot ID | - |
| Organism | Bacillus atrophaeus 1942 | ||
| Function | repression of comK; repression of rok (predicted from homology) Competence regulation |
||
Genomic Context
Location: 3668410..3678700
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BATR1942_RS18020 (BATR1942_18755) | darA | 3668428..3668757 (+) | 330 | WP_003328606.1 | cyclic di-AMP receptor DarA | - |
| BATR1942_RS18025 (BATR1942_18760) | - | 3668770..3669210 (+) | 441 | WP_003328605.1 | YaaR family protein | - |
| BATR1942_RS18030 (BATR1942_18765) | holB | 3669222..3670211 (+) | 990 | WP_010787388.1 | DNA polymerase III subunit delta' | - |
| BATR1942_RS18035 (BATR1942_18770) | ricT | 3670214..3671041 (+) | 828 | WP_003328602.1 | competence/sporulation regulator complex protein RicT | - |
| BATR1942_RS18040 (BATR1942_18775) | yabA | 3671056..3671415 (+) | 360 | WP_003328601.1 | replication initiation-control protein YabA | - |
| BATR1942_RS18045 (BATR1942_18780) | - | 3671476..3672219 (+) | 744 | WP_003328600.1 | tRNA1(Val) (adenine(37)-N6)-methyltransferase | - |
| BATR1942_RS18050 (BATR1942_18785) | - | 3672206..3672505 (+) | 300 | WP_003328599.1 | GIY-YIG nuclease family protein | - |
| BATR1942_RS18055 (BATR1942_18790) | rsmI | 3672480..3673358 (+) | 879 | WP_034717636.1 | 16S rRNA (cytidine(1402)-2'-O)-methyltransferase | - |
| BATR1942_RS18060 (BATR1942_18795) | abrB | 3673410..3673700 (-) | 291 | WP_087941801.1 | transition state genes transcriptional regulator AbrB | Regulator |
| BATR1942_RS18065 (BATR1942_18800) | metG | 3674187..3676181 (+) | 1995 | WP_003328595.1 | methionine--tRNA ligase | - |
| BATR1942_RS18070 (BATR1942_18805) | - | 3676260..3677027 (+) | 768 | WP_003328594.1 | TatD family hydrolase | - |
| BATR1942_RS18075 (BATR1942_18810) | - | 3677185..3678510 (+) | 1326 | WP_034717630.1 | G5 and 3D domain-containing protein | - |
Sequence
Protein
Download Length: 96 a.a. Molecular weight: 10801.62 Da Isoelectric Point: 6.3482
>NTDB_id=38811 BATR1942_RS18060 WP_087941801.1 3673410..3673700(-) (abrB) [Bacillus atrophaeus 1942]
MFMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSQEG
AEQIIKEIQNQLQSQK
MFMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSQEG
AEQIIKEIQNQLQSQK
Nucleotide
Download Length: 291 bp
>NTDB_id=38811 BATR1942_RS18060 WP_087941801.1 3673410..3673700(-) (abrB) [Bacillus atrophaeus 1942]
ATGTTTATGAAATCTACTGGTATCGTACGTAAAGTTGATGAACTAGGACGTGTAGTTATTCCTATCGAACTGCGCCGTAC
ACTTGGAATCGCAGAAAAAGACGCTCTTGAAATTTATGTTGATGATGAAAAAATCATCCTTAAAAAATATAAGCCTAACA
TGACTTGCCAAGTAACTGGTGAAGTTTCTGACGATAACCTTAAACTTGCAGGCGGCAAATTGGTTCTTAGCCAAGAAGGC
GCTGAGCAAATCATTAAAGAAATCCAAAACCAGCTTCAAAGCCAAAAATAA
ATGTTTATGAAATCTACTGGTATCGTACGTAAAGTTGATGAACTAGGACGTGTAGTTATTCCTATCGAACTGCGCCGTAC
ACTTGGAATCGCAGAAAAAGACGCTCTTGAAATTTATGTTGATGATGAAAAAATCATCCTTAAAAAATATAAGCCTAACA
TGACTTGCCAAGTAACTGGTGAAGTTTCTGACGATAACCTTAAACTTGCAGGCGGCAAATTGGTTCTTAGCCAAGAAGGC
GCTGAGCAAATCATTAAAGAAATCCAAAACCAGCTTCAAAGCCAAAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| abrB | Bacillus subtilis subsp. subtilis str. 168 |
95.833 |
100 |
0.958 |