Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   F5K02_RS11860 Genome accession   NZ_CP044132
Coordinates   2399971..2400579 (+) Length   202 a.a.
NCBI ID   WP_015417702.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain ZKY01     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2394971..2405579
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F5K02_RS11820 (F5K02_11880) - 2395991..2396497 (-) 507 WP_012117833.1 PTS glucose transporter subunit IIA -
  F5K02_RS11825 (F5K02_11885) - 2396636..2397049 (+) 414 WP_039254739.1 hypothetical protein -
  F5K02_RS11830 (F5K02_11890) - 2397079..2397546 (-) 468 WP_094032290.1 YppG family protein -
  F5K02_RS11835 (F5K02_11895) - 2397733..2397915 (+) 183 WP_003153532.1 YppF family protein -
  F5K02_RS11840 (F5K02_11900) - 2397954..2398322 (-) 369 WP_007409492.1 YppE family protein -
  F5K02_RS11845 (F5K02_11905) - 2398368..2398613 (-) 246 WP_094032289.1 DUF5446 family protein -
  F5K02_RS11850 (F5K02_11910) sspM 2398819..2398923 (+) 105 WP_003153525.1 acid-soluble spore protein SspM -
  F5K02_RS11855 (F5K02_11915) - 2398967..2399929 (-) 963 WP_094032288.1 DUF2515 domain-containing protein -
  F5K02_RS11860 (F5K02_11920) recU 2399971..2400579 (+) 609 WP_015417702.1 Holliday junction resolvase RecU Machinery gene
  F5K02_RS11865 (F5K02_11925) - 2400618..2403401 (+) 2784 WP_241457508.1 PBP1A family penicillin-binding protein -
  F5K02_RS11870 (F5K02_11930) - 2403478..2403969 (-) 492 WP_144664610.1 YpoC family protein -
  F5K02_RS11875 (F5K02_11935) nth 2403966..2404625 (-) 660 WP_007612187.1 endonuclease III -
  F5K02_RS11880 (F5K02_11940) dnaD 2404644..2405342 (-) 699 WP_060674319.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 23675.77 Da        Isoelectric Point: 9.5779

>NTDB_id=388097 F5K02_RS11860 WP_015417702.1 2399971..2400579(+) (recU) [Bacillus amyloliquefaciens strain ZKY01]
MIRYPNGKTFQPNKTVSSQNSQKRSHSYSNRGMTLEDDLNETNKYYLANQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTAFPLHNFHDHQIEHMKQVVRQDGICFVIISAFGKVYFLEADKLFVFWERKE
NNGRKSIRKDELEDASFPISLGYSPRIDYISIIEQLYFSQEQ

Nucleotide


Download         Length: 609 bp        

>NTDB_id=388097 F5K02_RS11860 WP_015417702.1 2399971..2400579(+) (recU) [Bacillus amyloliquefaciens strain ZKY01]
GTGATTCGGTACCCGAATGGAAAAACTTTTCAGCCGAACAAAACGGTTTCATCCCAAAACAGCCAGAAACGGTCCCATTC
ATACAGTAATCGCGGCATGACCCTCGAAGACGACCTGAATGAAACGAATAAGTATTATCTGGCTAACCAAATTGCTGTCA
TTCACAAAAAGCCGACACCCGTCCAAATTGTAAACGTCCACTATCCGAAAAGAAGCGCCGCAGTCATTAAGGAAGCTTAT
TTTAAACAGTCTTCCACAACTGACTACAACGGCATTTATAAAGGACGCTACATTGATTTTGAGGCAAAAGAAACAAAAAA
CAAAACGGCATTTCCGCTGCATAATTTTCACGATCATCAGATTGAGCATATGAAGCAGGTGGTCAGGCAAGACGGCATTT
GTTTTGTTATTATATCCGCTTTCGGAAAGGTTTATTTCCTCGAAGCCGACAAGCTGTTTGTCTTTTGGGAGAGAAAGGAG
AACAATGGCAGAAAATCAATTCGCAAAGACGAATTAGAAGATGCTTCCTTTCCGATTTCTCTTGGATACTCACCGAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCAGGAACAGTAG

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

89.95

98.515

0.886

Multiple sequence alignment