Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   F5K02_RS07740 Genome accession   NZ_CP044132
Coordinates   1492239..1492523 (+) Length   94 a.a.
NCBI ID   WP_003154557.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain ZKY01     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1487239..1497523
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F5K02_RS07720 (F5K02_07770) - 1488482..1489390 (+) 909 WP_064115428.1 ketopantoate reductase family protein -
  F5K02_RS07725 (F5K02_07775) - 1489422..1490654 (-) 1233 WP_094032405.1 aminopeptidase -
  F5K02_RS07730 (F5K02_07780) - 1490755..1490889 (-) 135 WP_003154559.1 protein YkpC -
  F5K02_RS07735 (F5K02_07785) mreBH 1490961..1491968 (-) 1008 WP_003154558.1 cell shape-determining protein MreBH -
  F5K02_RS07740 (F5K02_07795) abrB 1492239..1492523 (+) 285 WP_003154557.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  F5K02_RS07745 (F5K02_07800) - 1492696..1494000 (+) 1305 WP_064108138.1 ATP-binding protein -
  F5K02_RS07750 (F5K02_07805) - 1494002..1494829 (+) 828 WP_015239773.1 gamma-glutamylcyclotransferase family protein -
  F5K02_RS07755 (F5K02_07810) ktrC 1494870..1495535 (+) 666 WP_003154554.1 Ktr system potassium transporter KtrC -
  F5K02_RS07760 (F5K02_07815) ade 1495684..1497417 (+) 1734 WP_094032406.1 adenine deaminase -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10584.45 Da        Isoelectric Point: 5.2271

>NTDB_id=388092 F5K02_RS07740 WP_003154557.1 1492239..1492523(+) (abrB) [Bacillus amyloliquefaciens strain ZKY01]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIVLKKYKPHGICLMTGEITPENQEYGNGKIILSPEGAK
MLLEEIEEALKDRS

Nucleotide


Download         Length: 285 bp        

>NTDB_id=388092 F5K02_RS07740 WP_003154557.1 1492239..1492523(+) (abrB) [Bacillus amyloliquefaciens strain ZKY01]
ATGAAATCAATTGGTGTAGTAAGAAAAGTAGACGAACTCGGGCGTATTGTCATGCCGATTGAATTGAGAAGAGCATTGGA
TATCGCTATTAAAGATAGTATTGAATTTTTCGTTGACGGAGACAAAATTGTCTTGAAAAAATACAAGCCGCACGGCATTT
GCTTAATGACGGGGGAAATTACTCCCGAAAATCAGGAGTACGGCAACGGCAAAATTATTTTAAGTCCTGAAGGAGCGAAA
ATGCTGCTTGAGGAAATCGAGGAAGCGTTAAAAGATAGATCATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(54-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

55.435

97.872

0.543

Multiple sequence alignment