Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   HHJ30_RS08470 Genome accession   NZ_CP051765
Coordinates   1798113..1799540 (-) Length   475 a.a.
NCBI ID   WP_000980608.1    Uniprot ID   -
Organism   Escherichia coli strain SCU-113     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1793113..1804540
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HHJ30_RS08440 (HHJ30_08440) yeeZ 1793168..1793992 (+) 825 WP_000754763.1 SDR family oxidoreductase -
  HHJ30_RS08445 (HHJ30_08445) yeeY 1794038..1794967 (+) 930 WP_000803351.1 LysR substrate-binding domain-containing protein -
  HHJ30_RS08450 (HHJ30_08450) yoeI 1795182..1795244 (+) 63 WP_010723108.1 membrane protein YoeI -
  HHJ30_RS08455 (HHJ30_08455) plaP 1795234..1796592 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  HHJ30_RS08460 (HHJ30_08460) tsuA 1796771..1797829 (+) 1059 WP_000492340.1 thiosulfate utilization transporter TsuA/YeeE -
  HHJ30_RS08465 (HHJ30_08465) tsuB 1797843..1798070 (+) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  HHJ30_RS08470 (HHJ30_08470) sbcB 1798113..1799540 (-) 1428 WP_000980608.1 exodeoxyribonuclease I Machinery gene
  HHJ30_RS08475 (HHJ30_08475) dacD 1799749..1800915 (+) 1167 WP_000830169.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  HHJ30_RS08480 (HHJ30_08480) sbmC 1801034..1801507 (+) 474 WP_001105415.1 DNA gyrase inhibitor SbmC -
  HHJ30_RS08485 (HHJ30_08485) yeeA 1801705..1802763 (+) 1059 WP_001200891.1 FUSC family protein -
  HHJ30_RS08490 (HHJ30_08490) tmaR 1802935..1803264 (+) 330 WP_000450409.1 DUF496 family protein -
  HHJ30_RS08495 (HHJ30_08495) - 1803365..1803661 (-) 297 Protein_1671 EutP/PduV family microcompartment system protein -
  HHJ30_RS08500 (HHJ30_08500) - 1803640..1803999 (+) 360 WP_000543549.1 hypothetical protein -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54457.75 Da        Isoelectric Point: 5.6070

>NTDB_id=388083 HHJ30_RS08470 WP_000980608.1 1798113..1799540(-) (sbcB) [Escherichia coli strain SCU-113]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADNKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=388083 HHJ30_RS08470 WP_000980608.1 1798113..1799540(-) (sbcB) [Escherichia coli strain SCU-113]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTGTTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAACATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCTACTATTGCGATGGCAAAGCTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTGCACGTTTCCGGAATGTTTGGAGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGCGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTCGAT
AAACGGATTGAAAAGCTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTACAGGGTTATGCAGATGAATTGCAGATGCTGGCACAACAAT
ATGCCGATAACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.723

98.947

0.581

Multiple sequence alignment