Detailed information    

insolico Bioinformatically predicted

Overview

Name   recX   Type   Regulator
Locus tag   F5K02_RS04685 Genome accession   NZ_CP044132
Coordinates   937203..937994 (+) Length   263 a.a.
NCBI ID   WP_003155502.1    Uniprot ID   A0A9Q3QM78
Organism   Bacillus amyloliquefaciens strain ZKY01     
Function   inhibit excessive RecA-mediated recombination (predicted from homology)   
Competence regulation

Genomic Context

Location: 932203..942994
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F5K02_RS04660 (F5K02_04680) - 934198..935082 (+) 885 WP_031378902.1 PhzF family phenazine biosynthesis isomerase -
  F5K02_RS04665 (F5K02_04685) - 935159..935743 (+) 585 WP_007408549.1 nitroreductase -
  F5K02_RS04670 (F5K02_04690) - 935782..935973 (-) 192 WP_003155508.1 YfhD family protein -
  F5K02_RS04675 (F5K02_04695) - 936044..936154 (-) 111 WP_003155504.1 YfhE family protein -
  F5K02_RS04680 (F5K02_04700) - 936212..937111 (-) 900 WP_241458068.1 TIGR01777 family oxidoreductase -
  F5K02_RS04685 (F5K02_04705) recX 937203..937994 (+) 792 WP_003155502.1 recombination regulator RecX Regulator
  F5K02_RS04690 (F5K02_04710) - 938001..938315 (+) 315 WP_007408553.1 YfhH family protein -
  F5K02_RS04695 (F5K02_04715) - 938460..939653 (+) 1194 WP_076982912.1 MFS transporter -
  F5K02_RS04700 (F5K02_04720) - 939693..940082 (-) 390 WP_020955526.1 DUF2606 family protein -
  F5K02_RS04705 (F5K02_04725) - 940045..940956 (-) 912 WP_106080349.1 serine protease -
  F5K02_RS04710 (F5K02_04730) - 941102..941254 (-) 153 WP_003155495.1 small, acid-soluble spore protein K -
  F5K02_RS04715 (F5K02_04735) - 941378..941647 (+) 270 WP_003155492.1 YfhJ family protein -
  F5K02_RS04720 (F5K02_04740) - 941775..942302 (+) 528 WP_062623300.1 SH3 domain-containing protein -
  F5K02_RS04725 (F5K02_04745) - 942388..942723 (+) 336 WP_007408558.1 SdpI family protein -

Sequence

Protein


Download         Length: 263 a.a.        Molecular weight: 30978.18 Da        Isoelectric Point: 6.2735

>NTDB_id=388074 F5K02_RS04685 WP_003155502.1 937203..937994(+) (recX) [Bacillus amyloliquefaciens strain ZKY01]
MPFITKISTQKKNTERFNIFLDEKYAFSVDADVLVRFDLKKGKELDELDILEIQHGDDVKKAFNRAVEFLSYRMRSEKEV
RDHLKKKETPDMVISEVIHKLYDYRYLNDKEFAEAYASTHKKTNGKGPDVLFRELKAKGIDDDTIKETLSAFTFDEQIQE
ALKHIGKILKKDKKLSTKEIRQRAQMQLQRKGFPFDVINAALEQTEYENDDEAEMEALKAHAEKAIRKYRYDGSYESGMK
VKQYLFRKGFSIDDIDQFLQEEE

Nucleotide


Download         Length: 792 bp        

>NTDB_id=388074 F5K02_RS04685 WP_003155502.1 937203..937994(+) (recX) [Bacillus amyloliquefaciens strain ZKY01]
ATGCCGTTTATTACAAAAATATCGACCCAAAAGAAAAATACCGAGCGCTTCAACATCTTTCTTGATGAGAAATATGCATT
CAGCGTCGACGCCGACGTGCTTGTGCGTTTTGACCTGAAAAAAGGGAAAGAACTGGACGAGCTTGACATTCTTGAAATCC
AGCACGGCGATGACGTGAAAAAAGCCTTTAACCGCGCCGTAGAATTTTTATCATACCGGATGCGCTCTGAAAAAGAAGTC
CGGGATCATCTGAAGAAAAAAGAAACACCGGACATGGTCATTTCTGAAGTCATCCATAAACTGTACGATTACCGCTACTT
AAATGACAAAGAATTTGCCGAAGCCTATGCGAGCACCCACAAAAAAACAAACGGCAAAGGCCCTGACGTCCTGTTCCGCG
AGCTGAAAGCGAAAGGAATAGACGACGATACCATCAAGGAGACGCTCAGTGCGTTTACATTTGATGAGCAAATACAAGAA
GCGCTGAAACATATCGGCAAAATCCTGAAAAAGGACAAAAAGCTGTCCACAAAAGAGATCAGACAGCGGGCGCAGATGCA
GCTTCAGCGAAAAGGTTTCCCTTTCGACGTCATCAATGCCGCTCTGGAGCAGACGGAGTATGAAAATGATGATGAAGCCG
AGATGGAGGCTCTGAAGGCTCATGCGGAAAAAGCGATCAGGAAATACCGCTATGACGGCAGTTATGAAAGCGGAATGAAG
GTTAAACAGTACTTATTCAGAAAAGGATTCTCGATTGACGATATTGATCAATTCTTGCAGGAAGAGGAGTAA

Domains

Predicted by InterproScan.

RecX family (RecX_HTH2)

(84-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recX Bacillus subtilis subsp. subtilis str. 168

79.087

100

0.791

Multiple sequence alignment