Detailed information NTG0038805

Bioinformatically predicted

Overview

• Name: rapF
• Type: Regulator
• Locus tag: BATR1942_RS16005
• Genome accession: NC_014639
• Coordinates: 3268715..3269857 (+)
• Length: 380 a.a.
• NCBI ID: WP_003326491.1
• Uniprot ID: -
• Organism: Bacillus atrophaeus 1942
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 3263715..3274857

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BATR1942_RS15985 (BATR1942_16670)	-	3264181..3264882 (+)	702	WP_003326495.1	bacteriocin biosynthesis protein AlbG	-
BATR1942_RS15990 (BATR1942_16675)	-	3264889..3266265 (-)	1377	WP_003326494.1	YncE family protein	-
BATR1942_RS15995 (BATR1942_16680)	-	3266306..3267667 (-)	1362	WP_003326493.1	YncE family protein	-
BATR1942_RS16000 (BATR1942_16685)	-	3267950..3268504 (+)	555	WP_003326492.1	YdhK family protein	-
BATR1942_RS16005 (BATR1942_16690)	rapF	3268715..3269857 (+)	1143	WP_003326491.1	tetratricopeptide repeat protein	Regulator
BATR1942_RS16010 (BATR1942_16695)	-	3269841..3269960 (+)	120	WP_003326489.1	PhrC/PhrF family phosphatase-inhibitory pheromone	-
BATR1942_RS16015 (BATR1942_16700)	-	3270060..3270248 (+)	189	Protein_3286	YbaK/EbsC family protein	-
BATR1942_RS16020 (BATR1942_16705)	speB	3270308..3271180 (-)	873	WP_003326487.1	agmatinase	-
BATR1942_RS16025 (BATR1942_16710)	speE	3271241..3272071 (-)	831	WP_003326486.1	spermidine synthase	-
BATR1942_RS16030 (BATR1942_16715)	-	3272276..3274351 (+)	2076	WP_003326485.1	transglycosylase domain-containing protein	-
BATR1942_RS21915 (BATR1942_16720)	-	3274398..3274544 (-)	147	WP_003326484.1	hypothetical protein	-

Sequence

Protein

• Length: 380 a.a.
• Molecular weight: 45457.24 Da
• Isoelectric Point: 5.2528

>NTDB_id=38805 BATR1942_RS16005 WP_003326491.1 3268715..3269857(+) (rapF) [Bacillus atrophaeus 1942]
MTGVISSSIGEKINEWYMYIRRFSIPDAEYLRREIKQELAQIEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRL
SDLLLEIDKKQARLTGLLEYYFNFFRGMYELDQREYILAIQFFKKAESKLTFVKDKIDKAEFFFKMSEVYYYMKQTYVSM
DYARQAFEIYNEQTTYGIRMIQCQSLFGANFLDLKQYDKAIAHFQKAYTLAEAEQQPQLMGRTLYNIALCKQNQHSFESA
IEYVKKSIHVFEKSKMLPSLPQAFFLITQIYFKLGKIDNACEYHKKGREYSIAAGDNVYLMEFEFLESLYLSGPDEEAIK
KCFVFLESKMMYADIEDFALDVAKYYHQQECYKKASTYFLKVEEARQHIQGGVNLYEMEV

Nucleotide

• Length: 1143 bp

>NTDB_id=38805 BATR1942_RS16005 WP_003326491.1 3268715..3269857(+) (rapF) [Bacillus atrophaeus 1942]
GTGACAGGCGTCATATCTTCTTCCATTGGAGAAAAGATTAATGAATGGTACATGTACATACGCCGATTCAGCATACCGGA
TGCGGAATACTTACGAAGAGAAATCAAACAAGAGCTGGCTCAAATAGAAGAAGACCAGGATCTTCATTTGTATTATTCAC
TGATGGAATTCCGGCACAATCTGATGCTTGAGTATCTAGAACCGTTAGAAAAAATGCGGATAGAAGAACAGCCGCGACTG
TCCGATTTACTGCTTGAAATCGATAAAAAACAGGCTCGTTTAACCGGACTGCTTGAATACTATTTTAATTTCTTCAGAGG
TATGTATGAGCTGGACCAGCGGGAATATATATTAGCCATTCAATTTTTTAAAAAAGCAGAGAGCAAACTGACTTTTGTTA
AAGATAAAATTGATAAAGCTGAATTCTTTTTCAAAATGTCAGAAGTTTATTACTATATGAAGCAAACTTATGTGTCCATG
GACTATGCACGTCAAGCCTTTGAAATATACAATGAACAAACTACATATGGTATCAGAATGATTCAATGCCAGTCCCTGTT
TGGAGCTAACTTTTTGGACCTGAAACAGTATGATAAAGCAATTGCTCATTTCCAAAAAGCTTATACACTTGCTGAGGCAG
AACAGCAGCCGCAACTAATGGGAAGAACGCTTTATAATATTGCCCTTTGCAAGCAAAACCAACACAGCTTTGAATCAGCG
ATAGAGTATGTAAAAAAATCTATTCATGTATTTGAAAAATCTAAAATGCTTCCTTCACTGCCACAAGCCTTTTTCCTAAT
TACACAAATTTATTTTAAATTAGGTAAGATTGATAACGCTTGTGAATATCATAAAAAAGGAAGAGAATATTCAATAGCTG
CCGGAGACAATGTGTACTTAATGGAGTTTGAATTTTTGGAATCTTTATACTTGTCTGGACCTGATGAAGAAGCAATCAAA
AAATGTTTTGTTTTCCTTGAAAGTAAAATGATGTATGCTGATATTGAAGACTTTGCACTCGATGTTGCTAAGTATTATCA
TCAGCAGGAATGTTATAAAAAAGCATCTACTTACTTTTTAAAGGTTGAAGAAGCAAGACAGCACATTCAAGGGGGGGTGA
ATTTATATGAAATGGAAGTATAA

Domains

Predicted by InterproScan.

• Tetratricopeptide repeat (TPR_12) (188-251)

• response regulator aspartate phosphatase H, N terminal (RapH_N) (6-64)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapF	Bacillus subtilis subsp. subtilis str. 168	80.052	100	0.803
rapC	Bacillus subtilis subsp. subtilis str. 168	56.842	100	0.568