Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   LH500_RS08570 Genome accession   NZ_CP044119
Coordinates   1757107..1758480 (-) Length   457 a.a.
NCBI ID   WP_003554714.1    Uniprot ID   A0A6G9Q6N5
Organism   Lentilactobacillus hilgardii strain LH500     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1752107..1763480
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LH500_RS08550 (LH500_08550) - 1752227..1752637 (-) 411 WP_003636161.1 Mini-ribonuclease 3 -
  LH500_RS08555 (LH500_08555) cysS 1752646..1754052 (-) 1407 WP_003561074.1 cysteine--tRNA ligase -
  LH500_RS08560 (LH500_08560) gltX 1754201..1755691 (-) 1491 WP_003636159.1 glutamate--tRNA ligase -
  LH500_RS08565 (LH500_08565) - 1755889..1757082 (-) 1194 WP_003636158.1 PIN/TRAM domain-containing protein -
  LH500_RS08570 (LH500_08570) radA 1757107..1758480 (-) 1374 WP_003554714.1 DNA repair protein RadA Machinery gene
  LH500_RS08575 (LH500_08575) - 1758588..1759127 (-) 540 WP_003561080.1 dUTP diphosphatase -
  LH500_RS08580 (LH500_08580) rpiA 1759276..1759959 (+) 684 WP_003561082.1 ribose-5-phosphate isomerase RpiA -
  LH500_RS08585 (LH500_08585) - 1760211..1761545 (+) 1335 WP_040472809.1 aminopeptidase C -
  LH500_RS08590 (LH500_08590) - 1761729..1762406 (-) 678 WP_035462914.1 2,3-diphosphoglycerate-dependent phosphoglycerate mutase -

Sequence

Protein


Download         Length: 457 a.a.        Molecular weight: 49349.76 Da        Isoelectric Point: 7.6833

>NTDB_id=388021 LH500_RS08570 WP_003554714.1 1757107..1758480(-) (radA) [Lentilactobacillus hilgardii strain LH500]
MAKVKTQFVCQNCGYISPRYLGRCPNCNEWNTLVEETIAPKSNSTRTAGLRRTGVDEVKPEPLSSVTFQSEPRFKTGMEE
LNRVLGGGVVPGSLILIGGDPGIGKSTLMLQVSGQLSRSGKILYVSGEESASQIKMRADRLDVDSKQLYVFPETDMNVIK
STISDMKPDAVVIDSVQTMQIPELQSATGSVAQIREVTADLMNIAKGQGITVFVVGHVTKGGAIAGPKILEHMVDTVLYF
EGDLHHSYRILRTVKNRFGSTNELGVFEMMTDGLHEVTNPSEIFLEERLKDATGSAIVVSMEGTRPILVEIQALVTASVF
GNATRTATGLDRNRVSLIMAVLEKRAGLLLQNQDAYLKAAGGVKLDEPAIDLAIAVSIASSYKNRGTSPTECYVGELGLT
GEVRRVTRIEQRVSEAQKLGFKRVLVPANNLQGWTPPKGIDVVGVSTLSQALKLALG

Nucleotide


Download         Length: 1374 bp        

>NTDB_id=388021 LH500_RS08570 WP_003554714.1 1757107..1758480(-) (radA) [Lentilactobacillus hilgardii strain LH500]
TTGGCGAAAGTTAAAACCCAATTTGTATGTCAAAACTGCGGTTATATTTCACCGCGATATCTTGGACGGTGTCCTAACTG
TAACGAATGGAATACTTTGGTTGAAGAAACGATTGCGCCAAAGTCCAATTCAACCCGAACTGCCGGACTAAGAAGGACGG
GTGTCGATGAGGTTAAGCCCGAACCACTCAGTAGTGTCACATTTCAAAGTGAGCCCCGTTTTAAGACTGGCATGGAAGAA
CTCAATCGGGTGCTTGGCGGTGGTGTTGTTCCCGGATCATTAATCTTAATTGGCGGGGATCCTGGAATCGGCAAATCAAC
GTTGATGCTTCAAGTGTCAGGCCAATTGAGCAGATCGGGTAAAATTTTATATGTTTCCGGTGAGGAAAGTGCCAGCCAGA
TAAAAATGCGTGCAGATCGATTAGATGTTGACAGTAAACAGCTGTACGTCTTTCCTGAGACCGATATGAATGTCATTAAA
AGTACAATCAGCGATATGAAACCGGATGCCGTTGTCATTGATTCTGTTCAAACGATGCAGATTCCTGAGTTGCAGTCGGC
AACTGGTTCGGTTGCCCAAATTCGGGAAGTAACAGCTGATCTTATGAATATTGCAAAGGGTCAAGGAATTACGGTTTTTG
TTGTCGGTCATGTAACCAAGGGTGGCGCCATTGCCGGTCCTAAAATCTTGGAGCATATGGTTGACACGGTTCTTTATTTC
GAAGGAGATCTCCATCACTCATATAGAATTTTGAGAACGGTTAAAAATCGGTTTGGGTCTACAAATGAGCTGGGCGTTTT
TGAAATGATGACGGATGGCCTTCACGAAGTGACAAACCCTTCCGAAATCTTTTTGGAAGAGCGTCTTAAAGATGCCACCG
GATCTGCAATCGTGGTGTCTATGGAGGGTACCCGTCCTATACTGGTTGAAATTCAAGCCCTGGTGACAGCTTCTGTTTTT
GGAAATGCGACTAGGACTGCTACTGGATTAGATCGGAACCGGGTGTCATTAATTATGGCGGTTCTTGAAAAACGTGCCGG
TCTTCTTTTGCAAAATCAGGATGCCTATTTGAAAGCAGCTGGCGGTGTAAAACTGGATGAACCCGCCATCGATCTTGCGA
TTGCTGTTAGTATTGCTTCATCATATAAAAATCGTGGTACAAGTCCAACCGAATGTTACGTTGGGGAATTGGGACTAACT
GGAGAGGTTCGCCGAGTTACTCGGATTGAGCAACGTGTTTCCGAAGCCCAAAAGTTAGGCTTTAAACGGGTTTTAGTTCC
TGCAAATAACTTGCAGGGATGGACACCGCCAAAAGGAATTGACGTTGTTGGTGTATCAACCTTATCGCAGGCGCTTAAGC
TGGCATTGGGTTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(71-222)

Subunit ChlI of Mg-chelatase (ChlI)

(364-430)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6G9Q6N5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis NCTC 12261

65.639

99.344

0.652
  radA Streptococcus mitis SK321

65.419

99.344

0.65
  radA Streptococcus pneumoniae Rx1

65.419

99.344

0.65
  radA Streptococcus pneumoniae TIGR4

65.419

99.344

0.65
  radA Streptococcus pneumoniae D39

65.419

99.344

0.65
  radA Streptococcus pneumoniae R6

65.419

99.344

0.65
  radA Bacillus subtilis subsp. subtilis str. 168

63.537

100

0.637

Multiple sequence alignment