Detailed information NTG0388017

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: HHJ21_RS16430
• Genome accession: NZ_CP051753
• Coordinates: 3483311..3484303 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain SCU-102
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3478311..3489303

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HHJ21_RS16405 (HHJ21_16405)	ygbN	3478967..3480331 (+)	1365	WP_000104454.1	GntP family transporter	-
HHJ21_RS16410 (HHJ21_16410)	-	3480370..3480606 (-)	237	WP_000562977.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
HHJ21_RS16415 (HHJ21_16415)	-	3480617..3482044 (-)	1428	WP_000863202.1	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
HHJ21_RS16420 (HHJ21_16420)	-	3482044..3482637 (-)	594	WP_000767723.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
HHJ21_RS16425 (HHJ21_16425)	-	3482784..3483191 (+)	408	WP_001208078.1	MarR family transcriptional regulator	-
HHJ21_RS16430 (HHJ21_16430)	rpoS	3483311..3484303 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
HHJ21_RS16435 (HHJ21_16435)	nlpD	3484366..3485460 (-)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
HHJ21_RS16440 (HHJ21_16440)	pcm	3485645..3486271 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
HHJ21_RS16445 (HHJ21_16445)	surE	3486265..3487026 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
HHJ21_RS16450 (HHJ21_16450)	truD	3487007..3488056 (-)	1050	WP_000568924.1	tRNA pseudouridine(13) synthase TruD	-
HHJ21_RS16455 (HHJ21_16455)	ispF	3488053..3488532 (-)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
HHJ21_RS16460 (HHJ21_16460)	ispD	3488532..3489242 (-)	711	WP_000246131.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=388017 HHJ21_RS16430 WP_000081550.1 3483311..3484303(-) (rpoS) [Escherichia coli strain SCU-102]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=388017 HHJ21_RS16430 WP_000081550.1 3483311..3484303(-) (rpoS) [Escherichia coli strain SCU-102]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTTGCCTCCCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCTATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGCGAGTTGTCCCA
TAAACTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTACTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715