Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   HHJ21_RS16130 Genome accession   NZ_CP051753
Coordinates   3427880..3428395 (-) Length   171 a.a.
NCBI ID   WP_001130211.1    Uniprot ID   A0ABR8T9Y4
Organism   Escherichia coli strain SCU-102     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3422880..3433395
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HHJ21_RS16105 (HHJ21_16100) ygaZ 3423279..3424016 (+) 738 WP_000445658.1 L-valine exporter subunit YgaZ -
  HHJ21_RS16110 (HHJ21_16105) ygaH 3424006..3424341 (+) 336 WP_000119756.1 L-valine transporter subunit YgaH -
  HHJ21_RS16115 (HHJ21_16115) emrR 3424432..3424962 (+) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  HHJ21_RS16120 (HHJ21_16120) emrA 3425089..3426261 (+) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  HHJ21_RS16125 (HHJ21_16125) emrB 3426278..3427816 (+) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  HHJ21_RS16130 (HHJ21_16130) luxS 3427880..3428395 (-) 516 WP_001130211.1 S-ribosylhomocysteine lyase Regulator
  HHJ21_RS16135 (HHJ21_16135) gshA 3428545..3430101 (-) 1557 WP_000611778.1 glutamate--cysteine ligase -
  HHJ21_RS16140 (HHJ21_16140) yqaA 3430174..3430602 (-) 429 WP_001287454.1 YqaA family protein -
  HHJ21_RS16145 (HHJ21_16145) yqaB 3430599..3431165 (-) 567 WP_000273312.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  HHJ21_RS16175 (HHJ21_16175) csrA 3432457..3432642 (-) 186 WP_000906486.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19416.19 Da        Isoelectric Point: 5.0362

>NTDB_id=388014 HHJ21_RS16130 WP_001130211.1 3427880..3428395(-) (luxS) [Escherichia coli strain SCU-102]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=388014 HHJ21_RS16130 WP_001130211.1 3427880..3428395(-) (luxS) [Escherichia coli strain SCU-102]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTGCGCATCAACAGCAACGAAGAACTGGCG
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731