Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   LH500_RS04400 Genome accession   NZ_CP044119
Coordinates   915274..917079 (+) Length   601 a.a.
NCBI ID   WP_040472834.1    Uniprot ID   -
Organism   Lentilactobacillus hilgardii strain LH500     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 910274..922079
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LH500_RS04385 (LH500_04385) - 910960..912273 (+) 1314 WP_003636583.1 cell wall metabolism sensor histidine kinase WalK -
  LH500_RS04390 (LH500_04390) - 912401..913927 (-) 1527 WP_003636585.1 gamma-glutamylcysteine synthetase -
  LH500_RS04395 (LH500_04395) - 914085..915233 (+) 1149 WP_040472833.1 competence protein CoiA -
  LH500_RS04400 (LH500_04400) pepF 915274..917079 (+) 1806 WP_040472834.1 oligoendopeptidase F Regulator
  LH500_RS04405 (LH500_04405) - 917283..917909 (-) 627 WP_056956025.1 DsbA family protein -
  LH500_RS04410 (LH500_04410) - 918344..918994 (+) 651 WP_003561561.1 GTP pyrophosphokinase family protein -
  LH500_RS04415 (LH500_04415) - 918975..919787 (+) 813 WP_003555106.1 NAD kinase -
  LH500_RS04420 (LH500_04420) - 919780..920673 (+) 894 WP_003561556.1 RluA family pseudouridine synthase -
  LH500_RS04425 (LH500_04425) - 920686..921555 (+) 870 WP_003636594.1 methyltransferase domain-containing protein -
  LH500_RS04430 (LH500_04430) - 921548..922060 (+) 513 WP_035444930.1 tRNA (cytidine(34)-2'-O)-methyltransferase -

Sequence

Protein


Download         Length: 601 a.a.        Molecular weight: 69398.67 Da        Isoelectric Point: 5.2241

>NTDB_id=388007 LH500_RS04400 WP_040472834.1 915274..917079(+) (pepF) [Lentilactobacillus hilgardii strain LH500]
MSETQKLPLRKDVPADLTWDLTTIYQSDDQFEKDFVSVEKTLPSLKKLSGTLTQSAAALLTATETMLTAARKLEKVYVYA
QLKNDQDTSEDSYQAMYAKAQALAAQFGAATAWFDPELLKLNDKQMTSYYEAQPKLRDYKRLYDQTFAKRTHILSNEVEE
VLAGADDIFSSGEKTFGVLDNTDLSFPTVTDENGHQVQLSQGVYGILLESTNRDVRRQAFQKLYEVYSQFQHTLAATLTT
NVKNHNFKANVRQYHSALEAALSSTEIPVKVYDNLISEVNKHLDLLHRYVALRKRILGVDELHMYDLYTPLIGGKSPKYT
FDESKKVALDALQVMGPQYVNHVKEEFNNRWIDVVENRYKRSGGYSSGTYDTNPFILLNWKDNLDNLYTLIHETGHSMHS
YYASHNQPYQYGDYSIFVAEIASTTNENILTDYLLDKFKDDDKMKRYILNYYLDGFKGTVFRQTQFAEFEQYIHEQDAKG
QPLTANFLDNYYRQLNQKYYGESVISDKEIGLEWSRIPHFYYNFYVYQYATGFAAASTLADNIVNGDAEHVEKYLNYLKS
GSSDTPINVMKKAGVDMTQPEYLEKAFRIFEERLDEFEKLF

Nucleotide


Download         Length: 1806 bp        

>NTDB_id=388007 LH500_RS04400 WP_040472834.1 915274..917079(+) (pepF) [Lentilactobacillus hilgardii strain LH500]
ATGTCAGAGACACAGAAATTACCATTACGAAAGGATGTTCCAGCTGACTTAACCTGGGATTTAACAACCATTTATCAAAG
CGACGATCAATTTGAAAAAGATTTTGTAAGTGTTGAAAAGACGTTGCCAAGTCTTAAAAAATTATCAGGGACACTGACTC
AGAGTGCAGCAGCCCTGTTAACGGCAACAGAAACGATGCTGACTGCTGCCAGGAAACTTGAAAAGGTTTATGTATACGCT
CAGTTGAAAAACGATCAGGACACCAGTGAGGACAGTTATCAGGCCATGTACGCCAAAGCACAGGCTCTAGCAGCCCAGTT
TGGGGCCGCAACCGCATGGTTTGATCCCGAACTGTTGAAACTCAATGATAAACAGATGACTTCTTACTATGAGGCACAAC
CCAAGTTACGGGATTATAAACGGTTATATGATCAAACCTTTGCAAAGCGCACACATATTTTGAGCAATGAGGTTGAGGAG
GTTTTAGCCGGAGCCGATGATATTTTTTCATCCGGTGAAAAGACATTTGGCGTGTTGGATAACACAGACCTCTCATTTCC
AACGGTTACTGATGAGAATGGTCATCAGGTTCAACTATCCCAAGGTGTGTACGGTATTTTGCTTGAGTCAACGAATCGGG
ACGTCAGAAGACAGGCGTTTCAAAAACTTTATGAGGTTTATAGTCAATTTCAGCACACATTGGCTGCAACACTGACAACA
AATGTTAAAAATCATAATTTTAAAGCAAACGTACGTCAATATCATTCAGCATTGGAAGCAGCCTTGTCCTCAACCGAAAT
TCCGGTAAAGGTATATGATAATTTAATTTCCGAGGTTAACAAGCATTTGGATCTTTTACATCGATATGTTGCGCTTCGAA
AACGCATTCTGGGCGTAGACGAGTTGCATATGTATGATTTATATACACCATTAATCGGGGGGAAATCGCCTAAATACACG
TTTGATGAATCTAAGAAGGTGGCCTTGGATGCATTACAGGTGATGGGGCCCCAATATGTGAACCACGTTAAAGAAGAATT
TAATAATCGATGGATTGACGTTGTTGAGAATCGTTATAAACGAAGTGGTGGCTATTCTTCAGGAACGTATGATACCAATC
CGTTTATTCTATTAAACTGGAAGGACAATTTGGATAATTTATATACTTTGATCCATGAAACAGGTCATAGTATGCACAGC
TATTATGCGTCACATAATCAGCCATACCAATATGGTGACTACTCGATTTTTGTTGCCGAAATTGCTTCAACAACCAACGA
AAATATTTTGACGGATTATTTATTGGATAAATTTAAAGATGACGATAAGATGAAACGGTATATTTTGAACTATTACCTTG
ATGGATTTAAGGGCACTGTCTTTCGCCAGACACAATTTGCAGAATTTGAGCAGTATATTCACGAGCAGGACGCAAAGGGA
CAGCCGTTGACGGCCAACTTCCTTGATAACTATTACCGTCAGTTAAATCAAAAATATTACGGTGAAAGTGTTATTTCGGA
TAAAGAGATTGGTTTGGAGTGGTCACGAATTCCACATTTTTACTACAACTTCTATGTTTATCAATATGCAACAGGATTTG
CGGCGGCTTCGACACTTGCAGACAATATTGTCAATGGTGATGCCGAACATGTTGAAAAGTATCTTAATTATTTGAAGTCC
GGGAGTTCGGACACACCGATTAATGTCATGAAAAAGGCTGGTGTCGATATGACGCAGCCGGAATATTTGGAGAAGGCTTT
CAGAATCTTTGAAGAGCGATTGGATGAATTCGAAAAATTGTTTTAG

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(117-186)

Peptidase family M3 (Peptidase_M3)

(207-588)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

53.807

98.336

0.529

Multiple sequence alignment