Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   HHJ21_RS13025 Genome accession   NZ_CP051753
Coordinates   2744561..2745988 (+) Length   475 a.a.
NCBI ID   WP_000980538.1    Uniprot ID   -
Organism   Escherichia coli strain SCU-102     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2739561..2750988
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HHJ21_RS12995 (HHJ21_12990) - 2740103..2740438 (-) 336 WP_032159232.1 hypothetical protein -
  HHJ21_RS13000 (HHJ21_12995) - 2740441..2740737 (+) 297 Protein_2559 EutP/PduV family microcompartment system protein -
  HHJ21_RS13005 (HHJ21_13000) tmaR 2740838..2741167 (-) 330 WP_000450409.1 DUF496 family protein -
  HHJ21_RS13010 (HHJ21_13005) yeeA 2741339..2742397 (-) 1059 WP_001200892.1 FUSC family protein -
  HHJ21_RS13015 (HHJ21_13010) sbmC 2742597..2743067 (-) 471 WP_001105396.1 DNA gyrase inhibitor SbmC -
  HHJ21_RS13020 (HHJ21_13015) dacD 2743186..2744352 (-) 1167 WP_000830156.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  HHJ21_RS13025 (HHJ21_13020) sbcB 2744561..2745988 (+) 1428 WP_000980538.1 exodeoxyribonuclease I Machinery gene
  HHJ21_RS13030 (HHJ21_13025) plaP 2746062..2747420 (-) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  HHJ21_RS13035 (HHJ21_13030) yoeI 2747410..2747472 (-) 63 WP_010723108.1 membrane protein YoeI -
  HHJ21_RS13040 (HHJ21_13035) yeeY 2747687..2748616 (-) 930 WP_000803351.1 LysR substrate-binding domain-containing protein -
  HHJ21_RS13045 (HHJ21_13040) yeeZ 2748662..2749486 (-) 825 WP_000754739.1 SDR family oxidoreductase -
  HHJ21_RS13050 (HHJ21_13045) yoeB 2749569..2749823 (-) 255 WP_000767829.1 type II toxin-antitoxin system mRNA interferase toxin YoeB -
  HHJ21_RS13055 (HHJ21_13050) yefM 2749820..2750071 (-) 252 WP_001259251.1 YoeB-YefM toxin-antitoxin system antitoxin YefM -
  HHJ21_RS13060 (HHJ21_13055) hisL 2750355..2750405 (+) 51 WP_001364200.1 his operon leader peptide -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54456.72 Da        Isoelectric Point: 5.3476

>NTDB_id=388005 HHJ21_RS13025 WP_000980538.1 2744561..2745988(+) (sbcB) [Escherichia coli strain SCU-102]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDDEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=388005 HHJ21_RS13025 WP_000980538.1 2744561..2745988(+) (sbcB) [Escherichia coli strain SCU-102]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATGACGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCTCGGGCGAAAGGAGAAAAC
GAAGCCGCATTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGCTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCAAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACAAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTCTATATACCGCAAAAGCCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAACTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAATGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGGATTGAAAAGCTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTGCAGGGCTATGCAGATGAATTGCAGATGCTGGCACAACAAT
ATGCCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCACTTTGGCAGTACGCGGAAGAGATCGTCTGA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.936

98.947

0.583