Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   HHJ21_RS05095 Genome accession   NZ_CP051753
Coordinates   1109310..1109915 (+) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain SCU-102     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1104310..1114915
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HHJ21_RS23225 - 1104864..1104962 (+) 99 Protein_992 hypothetical protein -
  HHJ21_RS05065 (HHJ21_05060) rsmS 1105015..1105176 (-) 162 WP_000051146.1 pleiotropic regulatory protein RsmS -
  HHJ21_RS05070 (HHJ21_05065) priC 1105190..1105717 (-) 528 WP_000844856.1 primosomal replication protein N'' -
  HHJ21_RS05075 (HHJ21_05070) ybaN 1105787..1106164 (+) 378 WP_001188905.1 DUF454 family protein -
  HHJ21_RS05080 (HHJ21_05075) apt 1106317..1106868 (+) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  HHJ21_RS05085 (HHJ21_05080) dnaX 1106997..1108928 (+) 1932 WP_000122015.1 DNA polymerase III subunit gamma/tau -
  HHJ21_RS05090 (HHJ21_05085) ybaB 1108981..1109310 (+) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  HHJ21_RS05095 (HHJ21_05090) recR 1109310..1109915 (+) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  HHJ21_RS05100 (HHJ21_05095) htpG 1110025..1111899 (+) 1875 WP_000678201.1 molecular chaperone HtpG -
  HHJ21_RS05105 (HHJ21_05100) tnpA 1112081..1112539 (+) 459 WP_000526135.1 IS200/IS605-like element IS200C family transposase -
  HHJ21_RS05110 (HHJ21_05105) adk 1112792..1113436 (+) 645 WP_001366519.1 adenylate kinase -
  HHJ21_RS05115 (HHJ21_05110) hemH 1113568..1114530 (+) 963 WP_001250111.1 ferrochelatase -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=387986 HHJ21_RS05095 WP_001195025.1 1109310..1109915(+) (recR) [Escherichia coli strain SCU-102]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=387986 HHJ21_RS05095 WP_001195025.1 1109310..1109915(+) (recR) [Escherichia coli strain SCU-102]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGCCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACCTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGCGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCAGACGGGGCAGTTTTCAGGCCGTTATTTTGT
GTTGATGGGGCACCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGCCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAACCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAGCTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443