Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   FOB68_RS03545 Genome accession   NZ_CP044106
Coordinates   642269..642715 (+) Length   148 a.a.
NCBI ID   WP_001796473.1    Uniprot ID   -
Organism   Staphylococcus aureus strain FDAARGOS_660     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 637269..647715
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOB68_RS03510 (FOB68_03515) - 637763..637966 (+) 204 WP_000087561.1 YqgQ family protein -
  FOB68_RS03515 (FOB68_03520) - 637963..638949 (+) 987 WP_000161315.1 ROK family glucokinase -
  FOB68_RS03520 (FOB68_03525) - 638949..639278 (+) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  FOB68_RS03525 (FOB68_03530) - 639275..639898 (+) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  FOB68_RS03530 (FOB68_03535) comGA 639950..640924 (+) 975 WP_000697218.1 competence type IV pilus ATPase ComGA Machinery gene
  FOB68_RS03535 (FOB68_03540) comGB 640896..641966 (+) 1071 WP_000776407.1 competence type IV pilus assembly protein ComGB Machinery gene
  FOB68_RS03540 (FOB68_03545) comGC 641980..642291 (+) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  FOB68_RS03545 (FOB68_03550) comGD 642269..642715 (+) 447 WP_001796473.1 competence type IV pilus minor pilin ComGD Machinery gene
  FOB68_RS03550 (FOB68_03555) comGE 642702..643001 (+) 300 WP_000844413.1 hypothetical protein Machinery gene
  FOB68_RS03555 (FOB68_03560) comGF 642919..643416 (+) 498 WP_001838632.1 competence type IV pilus minor pilin ComGF Machinery gene
  FOB68_RS03560 (FOB68_03565) - 643513..643659 (+) 147 WP_001789879.1 hypothetical protein -
  FOB68_RS03565 (FOB68_03570) - 643649..644173 (+) 525 WP_001015116.1 shikimate kinase -
  FOB68_RS03570 (FOB68_03575) gcvT 644332..645423 (+) 1092 WP_000093349.1 glycine cleavage system aminomethyltransferase GcvT -
  FOB68_RS03575 (FOB68_03580) gcvPA 645443..646789 (+) 1347 WP_000019687.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 17131.31 Da        Isoelectric Point: 10.3312

>NTDB_id=387919 FOB68_RS03545 WP_001796473.1 642269..642715(+) (comGD) [Staphylococcus aureus strain FDAARGOS_660]
MEKQLQIRKQSAFTMIEMLVVMMLISIFLLLTMTSKGLSNLRVIDDEANIISLITELNYIKSQAIANQGYINVRFYENSD
TIKVIENNKIRFLKLKVGKIINVAKVDIIAFDKKGNINKFGSITIDNNNSIYRIIFHIEKGRIRYEKL

Nucleotide


Download         Length: 447 bp        

>NTDB_id=387919 FOB68_RS03545 WP_001796473.1 642269..642715(+) (comGD) [Staphylococcus aureus strain FDAARGOS_660]
ATGGAGAAGCAGTTGCAAATTAGAAAGCAGTCAGCATTTACTATGATTGAGATGCTTGTGGTAATGATGTTAATCAGTAT
ATTTTTACTTTTGACAATGACATCTAAAGGATTAAGCAATCTTAGAGTAATAGATGATGAGGCAAATATCATTTCTCTTA
TTACTGAATTGAATTATATTAAGTCGCAAGCTATAGCAAATCAAGGATATATCAATGTTAGATTTTATGAAAACAGTGAC
ACTATTAAAGTAATAGAGAATAATAAAATACGATTTCTAAAATTAAAAGTAGGCAAAATAATTAATGTTGCAAAAGTTGA
TATTATTGCCTTTGATAAAAAAGGGAATATCAATAAATTTGGTAGCATAACAATTGATAATAACAATTCAATTTATAGAA
TAATATTCCATATTGAAAAAGGAAGAATTCGTTATGAAAAGCTATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(8-31)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Staphylococcus aureus MW2

99.324

100

0.993
  comGD Staphylococcus aureus N315

99.324

100

0.993

Multiple sequence alignment