Detailed information NTG0387910

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: HHJ43_RS05630
• Genome accession: NZ_CP051751
• Coordinates: 1201169..1202161 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain SCU-301
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1196169..1207161

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HHJ43_RS05600 (HHJ43_05605)	ispD	1196230..1196940 (+)	711	WP_000246132.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
HHJ43_RS05605 (HHJ43_05610)	ispF	1196940..1197419 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
HHJ43_RS05610 (HHJ43_05615)	truD	1197416..1198465 (+)	1050	WP_075861751.1	tRNA pseudouridine(13) synthase TruD	-
HHJ43_RS05615 (HHJ43_05620)	surE	1198446..1199207 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
HHJ43_RS05620 (HHJ43_05625)	pcm	1199201..1199827 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
HHJ43_RS05625 (HHJ43_05630)	nlpD	1200012..1201106 (+)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
HHJ43_RS05630 (HHJ43_05635)	rpoS	1201169..1202161 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
HHJ43_RS05635 (HHJ43_05640)	-	1202281..1202688 (-)	408	WP_001208067.1	MarR family transcriptional regulator	-
HHJ43_RS05640 (HHJ43_05645)	-	1202835..1203428 (+)	594	WP_000767731.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
HHJ43_RS05645 (HHJ43_05650)	-	1203428..1204855 (+)	1428	WP_094030059.1	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
HHJ43_RS05650 (HHJ43_05655)	-	1204866..1205102 (+)	237	WP_000562982.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
HHJ43_RS05655 (HHJ43_05660)	ygbN	1205141..1206505 (-)	1365	WP_096986966.1	GntP family transporter	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=387910 HHJ43_RS05630 WP_000081550.1 1201169..1202161(+) (rpoS) [Escherichia coli strain SCU-301]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=387910 HHJ43_RS05630 WP_000081550.1 1201169..1202161(+) (rpoS) [Escherichia coli strain SCU-301]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTTGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGCCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCTTTGCTGGATCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGCGAGTTGTCCCA
TAAACTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTACTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAATAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715