Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   FOB62_RS08940 Genome accession   NZ_CP044102
Coordinates   1779646..1781448 (+) Length   600 a.a.
NCBI ID   WP_012767253.1    Uniprot ID   A0AB38XZI0
Organism   Streptococcus dysgalactiae strain FDAARGOS_654     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1774646..1786448
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOB62_RS08920 (FOB62_08925) nagB 1775775..1776488 (+) 714 WP_014612429.1 glucosamine-6-phosphate deaminase -
  FOB62_RS08925 (FOB62_08930) - 1776592..1777308 (+) 717 WP_014612428.1 pseudouridine synthase -
  FOB62_RS08930 (FOB62_08935) - 1777400..1778560 (+) 1161 WP_138128123.1 MFS transporter -
  FOB62_RS08935 (FOB62_08940) - 1778673..1779635 (+) 963 WP_003056374.1 competence protein CoiA family protein -
  FOB62_RS08940 (FOB62_08945) pepF 1779646..1781448 (+) 1803 WP_012767253.1 oligoendopeptidase F Regulator
  FOB62_RS08945 (FOB62_08950) - 1781635..1782183 (+) 549 WP_014612427.1 NADPH-dependent FMN reductase -
  FOB62_RS08950 (FOB62_08955) - 1782313..1782855 (+) 543 WP_014612426.1 GNAT family N-acetyltransferase -
  FOB62_RS08955 (FOB62_08960) - 1782855..1783478 (+) 624 WP_014612425.1 HAD-IA family hydrolase -
  FOB62_RS08960 (FOB62_08965) - 1783842..1785023 (+) 1182 WP_014612424.1 OFA family MFS transporter -
  FOB62_RS08965 (FOB62_08970) - 1785075..1785782 (+) 708 WP_015057801.1 O-methyltransferase -

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 69091.84 Da        Isoelectric Point: 4.7065

>NTDB_id=387896 FOB62_RS08940 WP_012767253.1 1779646..1781448(+) (pepF) [Streptococcus dysgalactiae strain FDAARGOS_654]
MTDNRSHLEEKYTWDLSTIFATDKDWEAEVSGLASEIDAAKDFSGHLLDSSANLLTITDTYLELARRVEKVYVYAHMKND
QDTTVAKYQEYQAKASGLYAKFSEVFSFYDPEVMALSQEDYQAFLAETPDLKRYHHFFDKLFQTRDHVLSQAEEELLAGA
QEIFNGAEETFSILDNADIVFPVVKNDKGEDVELTHGNFISLMESKDRSVRQAAYEAMYSTYEQFQHTYAKTLQTNVKVQ
NYKARVHKYDSARQAAMAANFIPEAVYDTLLETVNKHLPLLHRYLKLRQDVLGLDELKMYDVYTPLSETDLAIGYDEALE
KAEKVLAVFGKDYADRVHRAFTERWIDVHVNKGKRSGAYSGGSYDTNAFMLLNWQDTLDNLYTLVHETGHSLHSTFTRET
QPYVYGDYSIFLAEIASTTNENIMTEALLNEVQDEKERFAILNHYLDGFRGTVFRQTQFAEFEHAIHQADQKGEVLTSEY
LNQLYADLNEKYYGLSKDDNHFIQYEWARIPHFYYNYYVYQYATGFAAASYLAGKIVHGTQDDIDHYLTYLKSGNSDYPL
EVIAKAGVDMAKGDYLEAAFKVFEERLTELEALVAKGVHH

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=387896 FOB62_RS08940 WP_012767253.1 1779646..1781448(+) (pepF) [Streptococcus dysgalactiae strain FDAARGOS_654]
ATGACAGATAATCGTAGTCATTTAGAAGAAAAGTACACTTGGGATTTGAGCACTATTTTTGCAACAGATAAGGATTGGGA
AGCTGAAGTCAGTGGCTTAGCTAGTGAAATTGACGCGGCTAAGGATTTTTCAGGTCATTTACTAGATTCTAGCGCTAATC
TGTTGACAATTACAGATACTTATTTAGAGTTAGCTCGTCGTGTTGAGAAAGTCTATGTCTATGCTCATATGAAAAATGAT
CAAGACACGACTGTTGCTAAATATCAAGAATATCAGGCTAAGGCTTCTGGCTTGTATGCTAAATTTAGCGAAGTGTTTTC
ATTCTATGACCCAGAAGTTATGGCATTGAGTCAGGAAGATTACCAAGCTTTTCTTGCGGAAACTCCTGATTTAAAAAGGT
ATCATCATTTCTTTGACAAATTGTTCCAGACACGTGACCATGTGCTTAGCCAGGCTGAAGAGGAATTATTAGCAGGAGCC
CAAGAAATTTTCAATGGCGCTGAAGAAACCTTTAGCATTCTGGATAACGCTGATATTGTCTTTCCAGTAGTTAAAAATGA
TAAGGGGGAAGATGTTGAATTAACCCATGGTAACTTTATCAGTTTAATGGAATCTAAAGATCGTAGCGTTCGCCAAGCTG
CTTACGAGGCAATGTATAGCACTTATGAACAGTTCCAACACACTTATGCTAAAACCTTACAAACAAATGTTAAGGTTCAA
AATTACAAGGCGCGTGTTCATAAATACGATTCAGCACGTCAAGCTGCCATGGCTGCTAACTTTATTCCAGAAGCTGTTTA
CGACACTTTATTAGAAACGGTTAACAAACATTTACCACTTTTACACCGTTACTTGAAACTTCGCCAAGATGTTCTTGGTC
TAGATGAGTTGAAGATGTATGATGTTTACACACCATTATCTGAAACAGACCTAGCCATTGGTTATGATGAGGCTTTGGAA
AAAGCTGAGAAGGTTTTGGCTGTTTTTGGTAAGGATTATGCAGACCGAGTGCATCGTGCCTTTACAGAACGTTGGATTGA
TGTTCATGTCAATAAAGGGAAGCGCTCTGGAGCTTATTCGGGTGGTTCCTACGACACCAATGCCTTTATGCTATTAAACT
GGCAAGATACCTTAGACAATCTATACACTTTAGTTCATGAAACTGGGCACAGTTTGCATTCTACTTTCACTCGTGAAACA
CAGCCTTATGTGTATGGAGATTACAGTATTTTCCTAGCAGAAATTGCATCCACAACTAATGAAAACATCATGACAGAAGC
TCTCTTAAATGAGGTTCAAGATGAGAAAGAACGCTTTGCTATTTTAAACCATTACCTTGACGGTTTCCGTGGCACTGTTT
TCCGTCAAACCCAATTTGCTGAGTTTGAACACGCGATCCATCAAGCTGATCAAAAAGGAGAAGTGTTAACGAGCGAATAC
CTCAACCAATTGTATGCTGATTTGAATGAAAAGTATTATGGGTTGAGTAAAGACGATAATCATTTTATTCAATATGAGTG
GGCACGTATTCCTCACTTCTATTATAATTATTATGTTTATCAGTATGCTACAGGCTTTGCAGCAGCAAGTTATTTAGCCG
GTAAGATTGTTCACGGAACGCAAGACGATATTGATCATTACTTGACCTACCTCAAGTCAGGAAATTCTGACTACCCACTT
GAGGTCATCGCTAAAGCGGGTGTTGATATGGCAAAAGGTGACTATCTTGAAGCAGCCTTTAAAGTCTTCGAAGAACGTCT
AACAGAACTTGAAGCCCTTGTTGCAAAAGGAGTTCATCACTAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(202-581)

Oligopeptidase F (Peptidase_M3_N)

(112-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

71.953

99.833

0.718

Multiple sequence alignment