Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   BATR1942_RS11195 Genome accession   NC_014639
Coordinates   2290493..2291239 (-) Length   248 a.a.
NCBI ID   WP_003325235.1    Uniprot ID   -
Organism   Bacillus atrophaeus 1942     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2285493..2296239
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BATR1942_RS11170 (BATR1942_11775) mreC 2285889..2286761 (-) 873 WP_003325240.1 rod shape-determining protein MreC -
  BATR1942_RS11175 (BATR1942_11780) mreB 2286792..2287805 (-) 1014 WP_003325239.1 cell shape-determining protein MreB -
  BATR1942_RS11180 (BATR1942_11785) radC 2287897..2288592 (-) 696 WP_003325238.1 RadC family protein -
  BATR1942_RS11185 (BATR1942_11790) - 2288627..2289196 (-) 570 WP_003325237.1 Maf family protein -
  BATR1942_RS11190 (BATR1942_11795) - 2289343..2290359 (-) 1017 WP_003325236.1 SPOR domain-containing protein -
  BATR1942_RS11195 (BATR1942_11800) comC 2290493..2291239 (-) 747 WP_003325235.1 prepilin peptidase Machinery gene
  BATR1942_RS11200 (BATR1942_11805) - 2291393..2292688 (-) 1296 WP_003325234.1 bifunctional folylpolyglutamate synthase/dihydrofolate synthase -
  BATR1942_RS11205 (BATR1942_11810) valS 2292746..2295388 (-) 2643 WP_013390613.1 valine--tRNA ligase -
  BATR1942_RS11210 (BATR1942_11815) - 2295835..2296026 (+) 192 WP_003325232.1 hypothetical protein -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 26768.46 Da        Isoelectric Point: 9.1068

>NTDB_id=38788 BATR1942_RS11195 WP_003325235.1 2290493..2291239(-) (comC) [Bacillus atrophaeus 1942]
MVLVMFILGLIFGSFFYAAGCRIPLQISIIKPRSSCSFCRNPLSYTELIPVFSFFLQKGRCKSCSQKLSLMYPAAELWTA
GLFTAAYLRFGLSGELFVALLLISLLSIIVASDIHYMLIPDSVLMFFLPFLIAGRMIAPLPAWYDSLSGAAAGFFMLVLI
AVLSKGGIGGGDIKLFAVLGIALGVKMLIAAFVLAVFIGMLYGACGTLSGKLDRKQPIPFAPAIAAGSLVSYLYGEEILA
LYVKMAMY

Nucleotide


Download         Length: 747 bp        

>NTDB_id=38788 BATR1942_RS11195 WP_003325235.1 2290493..2291239(-) (comC) [Bacillus atrophaeus 1942]
ATGGTTTTAGTCATGTTTATCCTCGGTCTCATCTTCGGGTCCTTTTTCTATGCGGCAGGCTGCCGTATCCCCTTACAAAT
CTCCATTATAAAACCGCGCTCATCCTGTTCATTTTGCCGCAATCCGTTGTCTTATACTGAATTAATCCCGGTTTTCTCTT
TCTTTCTGCAAAAAGGCCGATGTAAAAGCTGTTCACAAAAACTGTCGCTGATGTATCCGGCCGCAGAGCTTTGGACAGCG
GGTTTGTTTACGGCAGCTTATCTGCGTTTCGGTTTATCCGGGGAACTTTTTGTCGCGCTGCTGCTCATATCATTGCTGAG
CATTATCGTGGCATCAGATATTCACTATATGCTGATCCCTGACAGCGTGCTGATGTTTTTTCTTCCTTTTTTGATAGCAG
GAAGAATGATTGCACCGCTTCCTGCTTGGTATGATAGTTTATCAGGAGCCGCAGCCGGTTTTTTCATGCTGGTCTTGATT
GCCGTACTCAGTAAAGGAGGAATCGGGGGCGGCGATATTAAGCTATTTGCCGTTTTGGGTATCGCGCTTGGTGTTAAAAT
GCTGATCGCAGCCTTTGTCCTTGCTGTCTTTATAGGTATGCTGTACGGCGCATGCGGCACGTTGTCAGGAAAGCTCGATC
GAAAACAGCCGATCCCCTTCGCTCCTGCGATAGCTGCCGGAAGCTTGGTAAGTTATCTGTACGGTGAAGAAATATTAGCA
CTCTATGTCAAAATGGCCATGTACTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(7-90)

Type IV leader peptidase family (Peptidase_A24)

(101-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

61.943

99.597

0.617

Multiple sequence alignment