Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   FOB54_RS06530 Genome accession   NZ_CP044097
Coordinates   1412086..1412709 (+) Length   207 a.a.
NCBI ID   WP_114848411.1    Uniprot ID   -
Organism   Citrobacter koseri strain FDAARGOS_646     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1407086..1417709
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOB54_RS06510 (FOB54_06510) - 1407485..1409245 (-) 1761 WP_114848412.1 Lon protease family protein -
  FOB54_RS06515 (FOB54_06515) matP 1409431..1409883 (+) 453 WP_012132968.1 macrodomain Ter protein MatP -
  FOB54_RS06520 (FOB54_06520) ompA 1409958..1411004 (-) 1047 WP_047463714.1 porin OmpA -
  FOB54_RS06525 (FOB54_06525) sulA 1411360..1411869 (-) 510 WP_012132966.1 SOS-induced cell division inhibitor SulA -
  FOB54_RS06530 (FOB54_06530) sxy/tfoX 1412086..1412709 (+) 624 WP_114848411.1 TfoX/Sxy family DNA transformation protein Regulator
  FOB54_RS06535 (FOB54_06535) yccS 1412678..1414825 (-) 2148 WP_114848502.1 YccS family putative transporter -
  FOB54_RS06540 (FOB54_06540) - 1414844..1415290 (-) 447 WP_012132963.1 YccF domain-containing protein -
  FOB54_RS06545 (FOB54_06545) helD 1415414..1417468 (+) 2055 WP_114848410.1 DNA helicase IV -

Sequence

Protein


Download         Length: 207 a.a.        Molecular weight: 24000.78 Da        Isoelectric Point: 9.5783

>NTDB_id=387776 FOB54_RS06530 WP_114848411.1 1412086..1412709(+) (sxy/tfoX) [Citrobacter koseri strain FDAARGOS_646]
MKLRSYDKIYKSQEYLASLGTVHYRSLFGSYSLTIEDTVFAMVAEGELYLRACEQSVAYCVKHSPVWLTFMKRGRPVMLN
YYRVDESLWRDQQQLVLLSQYSLDAAIKEKRTRFSQRRLKNLPNVTFHLENLLHEAGINDENTLRILGAKMCWLRLRESN
KLLTVKILYALEGAIVGVHEAALPAVRRQELAEWAQSLTPERQKATA

Nucleotide


Download         Length: 624 bp        

>NTDB_id=387776 FOB54_RS06530 WP_114848411.1 1412086..1412709(+) (sxy/tfoX) [Citrobacter koseri strain FDAARGOS_646]
ATGAAATTACGTTCCTATGACAAGATCTATAAATCGCAAGAATATTTAGCCTCTCTGGGCACGGTTCACTATCGTTCGCT
GTTTGGTAGCTACAGCCTGACAATCGAGGATACGGTGTTTGCGATGGTGGCTGAGGGAGAACTATACCTGCGCGCCTGTG
AGCAAAGCGTCGCGTACTGCGTGAAGCATTCCCCCGTCTGGTTAACATTTATGAAACGTGGCCGTCCCGTTATGTTGAAT
TATTACCGGGTGGATGAAAGCTTATGGCGCGATCAACAACAACTGGTGCTTTTATCTCAGTATTCGCTGGATGCTGCCAT
AAAAGAAAAACGTACCCGTTTTTCACAACGTCGATTGAAGAATCTGCCAAACGTGACGTTTCATCTGGAGAACCTTCTGC
ATGAGGCCGGAATTAATGATGAAAACACATTGCGGATACTCGGCGCAAAAATGTGTTGGCTGCGGCTAAGAGAGAGCAAT
AAGCTGCTGACGGTGAAAATTCTCTATGCGTTAGAAGGGGCGATCGTTGGCGTACATGAAGCGGCGCTCCCGGCGGTACG
CCGCCAGGAGCTTGCTGAGTGGGCGCAGTCGCTTACGCCGGAGCGCCAGAAGGCGACGGCGTGA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

72.414

98.068

0.71

Multiple sequence alignment