Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   HHJ23_RS09445 Genome accession   NZ_CP051738
Coordinates   1982323..1983750 (-) Length   475 a.a.
NCBI ID   WP_001544682.1    Uniprot ID   -
Organism   Escherichia coli strain SCU-105     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1977323..1988750
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HHJ23_RS09410 (HHJ23_09410) hisL 1977907..1977957 (-) 51 WP_001364200.1 his operon leader peptide -
  HHJ23_RS09415 (HHJ23_09415) yefM 1978240..1978491 (+) 252 WP_001259255.1 YoeB-YefM toxin-antitoxin system antitoxin YefM -
  HHJ23_RS09420 (HHJ23_09420) yoeB 1978488..1978742 (+) 255 WP_000767829.1 type II toxin-antitoxin system mRNA interferase toxin YoeB -
  HHJ23_RS09425 (HHJ23_09425) yeeZ 1978825..1979649 (+) 825 WP_000754758.1 SDR family oxidoreductase -
  HHJ23_RS09430 (HHJ23_09430) yeeY 1979695..1980624 (+) 930 WP_024192945.1 LysR substrate-binding domain-containing protein -
  HHJ23_RS09435 (HHJ23_09435) yoeI 1980839..1980901 (+) 63 WP_010723108.1 membrane protein YoeI -
  HHJ23_RS09440 (HHJ23_09440) plaP 1980891..1982249 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  HHJ23_RS09445 (HHJ23_09445) sbcB 1982323..1983750 (-) 1428 WP_001544682.1 exodeoxyribonuclease I Machinery gene
  HHJ23_RS09450 (HHJ23_09450) dacD 1983959..1985125 (+) 1167 WP_000830169.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  HHJ23_RS09455 (HHJ23_09455) sbmC 1985244..1985717 (+) 474 WP_001105410.1 DNA gyrase inhibitor SbmC -
  HHJ23_RS09460 (HHJ23_09460) yeeA 1985915..1986973 (+) 1059 WP_001200891.1 FUSC family protein -
  HHJ23_RS09465 (HHJ23_09465) tmaR 1987145..1987474 (+) 330 WP_000450409.1 DUF496 family protein -
  HHJ23_RS09470 (HHJ23_09470) - 1987575..1987709 (-) 135 WP_001300152.1 EutP/PduV family microcompartment system protein -
  HHJ23_RS09475 (HHJ23_09475) cobU 1987933..1988478 (+) 546 WP_024192944.1 bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54472.76 Da        Isoelectric Point: 5.4700

>NTDB_id=387753 HHJ23_RS09445 WP_001544682.1 1982323..1983750(-) (sbcB) [Escherichia coli strain SCU-105]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIL

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=387753 HHJ23_RS09445 WP_001544682.1 1982323..1983750(-) (sbcB) [Escherichia coli strain SCU-105]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CTGATGACTATTTACCCCAGCCAGGAGCCGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTGTTGGATGTGATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCTGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGCGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTCGAT
AAACGGATTGAAAAGCTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTACAGGGTTATGCAGATGAATTGCAGATGCTGGCACAACAAT
ATGCCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCCTCTGA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.936

98.947

0.583

Multiple sequence alignment