Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   HHJ23_RS00860 Genome accession   NZ_CP051738
Coordinates   196833..197816 (+) Length   327 a.a.
NCBI ID   WP_001196487.1    Uniprot ID   -
Organism   Escherichia coli strain SCU-105     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 191833..202816
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HHJ23_RS00845 (HHJ23_00845) dppA 193133..194740 (+) 1608 WP_001222876.1 dipeptide ABC transporter substrate-binding protein DppA -
  HHJ23_RS00850 (HHJ23_00850) dppB 194891..195910 (+) 1020 WP_000938865.1 dipeptide ABC transporter permease DppB -
  HHJ23_RS00855 (HHJ23_00855) dppC 195920..196822 (+) 903 WP_000084677.1 dipeptide ABC transporter permease DppC -
  HHJ23_RS00860 (HHJ23_00860) amiE 196833..197816 (+) 984 WP_001196487.1 dipeptide ABC transporter ATP-binding protein Regulator
  HHJ23_RS00865 (HHJ23_00865) dppF 197813..198817 (+) 1005 WP_000103580.1 dipeptide ABC transporter ATP-binding subunit DppF -
  HHJ23_RS00870 (HHJ23_00870) yhjV 198847..200118 (-) 1272 WP_001306601.1 aromatic amino acid transport family protein -
  HHJ23_RS00875 (HHJ23_00875) - 200594..200701 (+) 108 WP_000170743.1 type I toxin-antitoxin system toxin Ldr family protein -
  HHJ23_RS00880 (HHJ23_00880) - 201077..201184 (+) 108 WP_000170736.1 type I toxin-antitoxin system toxin Ldr family protein -

Sequence

Protein


Download         Length: 327 a.a.        Molecular weight: 35860.36 Da        Isoelectric Point: 6.5814

>NTDB_id=387722 HHJ23_RS00860 WP_001196487.1 196833..197816(+) (amiE) [Escherichia coli strain SCU-105]
MALLNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISE
KERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKSTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQ
RVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVETGDAHA
IFHAPRHPYTQALLRALPEFAQDKERLASLPGVVPGKYDRPNGCLLNPRCPYATDRCRAEEPALNMLSDGRQSKCHYPLD
DAGRPTL

Nucleotide


Download         Length: 984 bp        

>NTDB_id=387722 HHJ23_RS00860 WP_001196487.1 196833..197816(+) (amiE) [Escherichia coli strain SCU-105]
ATGGCGTTATTAAATGTAGATAAATTATCGGTGCATTTCGGCGACGAAAGCGCACCGTTCCGCGCCGTAGACCGCATCAG
CTACAGCGTAAAACAGGGCGAAGTGGTCGGGATTGTGGGTGAGTCCGGCTCTGGTAAATCGGTCAGTTCGCTGGCGATTA
TGGGGCTGATTGATTATCCGGGCCGCGTAATGGCGGAAAAGCTGGAGTTTAACGGTCAGGATTTACAGCGTATCTCAGAA
AAAGAGCGCCGCAACCTGGTGGGTGCCGAAGTGGCGATGATCTTCCAGGACCCGATGACCAGCCTTAACCCGTGCTACAC
CGTGGGTTTCCAGATTATGGAAGCGATTAAGGTGCATCAGGGCGGCAACAAAAGTACCCGCCGTCAGCGGGCGATTGACC
TGCTGAATCAGGTCGGTATTCCCGATCCGGCATCGCGTCTGGATGTTTACCCGCATCAGCTTTCCGGCGGCATGAGCCAG
CGCGTGATGATCGCCATGGCGATTGCCTGTCGGCCAAAGCTGCTGATTGCCGATGAACCAACCACTGCGCTGGACGTGAC
CATTCAGGCGCAAATTATCGAACTGCTGCTGGAGCTACAGCAGAAAGAGAACATGGCGCTGGTGTTGATCACTCATGACC
TGGCACTGGTGGCGGAAGCGGCACATAAAATCATCGTGATGTATGCAGGCCAGGTGGTGGAAACGGGCGATGCCCACGCC
ATCTTCCATGCGCCGCGTCATCCATATACTCAGGCATTGCTGCGTGCGCTGCCGGAATTTGCTCAGGACAAAGAACGTCT
GGCGTCGTTGCCAGGTGTTGTTCCCGGCAAGTATGACCGCCCGAACGGCTGCCTGCTTAACCCGCGCTGCCCCTATGCCA
CTGACAGATGTCGCGCTGAAGAACCGGCGCTGAATATGCTCTCTGACGGGCGTCAGTCCAAATGCCATTACCCACTTGAT
GATGCCGGGAGGCCGACACTATGA

Domains

Predicted by InterProScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(233-297)

ABC transporter (ABC_tran)

(24-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

43.614

98.165

0.428
  amiE Streptococcus thermophilus LMG 18311

43.302

98.165

0.425
  amiE Streptococcus thermophilus LMD-9

43.302

98.165

0.425
  oppD Streptococcus mutans UA159

41.693

97.554

0.407