Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | HHJ26_RS18210 | Genome accession | NZ_CP051735 |
| Coordinates | 3811521..3811961 (-) | Length | 146 a.a. |
| NCBI ID | WP_000360914.1 | Uniprot ID | A0A0H2YVZ3 |
| Organism | Escherichia coli strain SCU-108 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 3806521..3816961
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HHJ26_RS18190 (HHJ26_18195) | coaE | 3807011..3807631 (-) | 621 | WP_001269535.1 | dephospho-CoA kinase | - |
| HHJ26_RS25650 | - | 3807656..3807700 (+) | 45 | WP_120795372.1 | protein YacM | - |
| HHJ26_RS18195 (HHJ26_18200) | guaC | 3807856..3808899 (+) | 1044 | WP_001217338.1 | GMP reductase | - |
| HHJ26_RS18200 (HHJ26_18205) | hofC | 3808934..3810136 (-) | 1203 | WP_000157254.1 | protein transport protein HofC | - |
| HHJ26_RS18205 (HHJ26_18210) | pilB | 3810126..3811511 (-) | 1386 | WP_001025178.1 | type II secretion system protein GspE | Machinery gene |
| HHJ26_RS18210 (HHJ26_18215) | pilA | 3811521..3811961 (-) | 441 | WP_000360914.1 | prepilin peptidase-dependent pilin | Machinery gene |
| HHJ26_RS18215 (HHJ26_18220) | nadC | 3812165..3813058 (-) | 894 | WP_001135168.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| HHJ26_RS18220 (HHJ26_18225) | ampD | 3813146..3813697 (+) | 552 | WP_000923703.1 | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | - |
| HHJ26_RS18225 (HHJ26_18230) | ampE | 3813694..3814548 (+) | 855 | WP_000171983.1 | beta-lactamase regulator AmpE | - |
| HHJ26_RS18230 (HHJ26_18235) | aroP | 3814591..3815961 (-) | 1371 | WP_000399017.1 | aromatic amino acid transporter AroP | - |
Sequence
Protein
Download Length: 146 a.a. Molecular weight: 15620.77 Da Isoelectric Point: 4.5237
>NTDB_id=387704 HHJ26_RS18210 WP_000360914.1 3811521..3811961(-) (pilA) [Escherichia coli strain SCU-108]
MDKQRGFTLIELMVVIGIIAILSAIGIPAYQNYLRKAALTDMLQTFVPYRTAVELCALEHGGLNTCDGGSNGIPSPTTTR
YVSAMSVAKGVVSLTGQESLNGLSVVMTPGWDNANGVTGWTRNCNIQSDSALQQACEDVFRFDDAN
MDKQRGFTLIELMVVIGIIAILSAIGIPAYQNYLRKAALTDMLQTFVPYRTAVELCALEHGGLNTCDGGSNGIPSPTTTR
YVSAMSVAKGVVSLTGQESLNGLSVVMTPGWDNANGVTGWTRNCNIQSDSALQQACEDVFRFDDAN
Nucleotide
Download Length: 441 bp
>NTDB_id=387704 HHJ26_RS18210 WP_000360914.1 3811521..3811961(-) (pilA) [Escherichia coli strain SCU-108]
ATGGACAAGCAACGCGGTTTTACACTTATCGAACTGATGGTGGTTATTGGCATCATTGCCATTTTAAGCGCCATTGGTAT
TCCCGCTTATCAAAACTACCTGCGCAAAGCCGCACTCACCGACATGCTACAAACCTTTGTGCCTTACCGTACCGCCGTAG
AGTTGTGCGCGCTGGAACATGGTGGATTAAATACCTGCGACGGTGGCAGCAATGGCATTCCCTCGCCTACCACCACCCGC
TATGTTTCAGCCATGAGTGTGGCAAAGGGCGTGGTGTCGCTGACCGGGCAAGAAAGTCTCAATGGACTAAGCGTCGTCAT
GACGCCGGGTTGGGATAACGCAAACGGCGTCACCGGCTGGACGCGTAACTGCAATATTCAAAGTGACAGCGCATTGCAGC
AAGCCTGCGAAGATGTCTTCCGCTTTGATGACGCCAACTAA
ATGGACAAGCAACGCGGTTTTACACTTATCGAACTGATGGTGGTTATTGGCATCATTGCCATTTTAAGCGCCATTGGTAT
TCCCGCTTATCAAAACTACCTGCGCAAAGCCGCACTCACCGACATGCTACAAACCTTTGTGCCTTACCGTACCGCCGTAG
AGTTGTGCGCGCTGGAACATGGTGGATTAAATACCTGCGACGGTGGCAGCAATGGCATTCCCTCGCCTACCACCACCCGC
TATGTTTCAGCCATGAGTGTGGCAAAGGGCGTGGTGTCGCTGACCGGGCAAGAAAGTCTCAATGGACTAAGCGTCGTCAT
GACGCCGGGTTGGGATAACGCAAACGGCGTCACCGGCTGGACGCGTAACTGCAATATTCAAAGTGACAGCGCATTGCAGC
AAGCCTGCGAAGATGTCTTCCGCTTTGATGACGCCAACTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Haemophilus influenzae 86-028NP |
43.089 |
84.247 |
0.363 |