Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   BATR1942_RS08505 Genome accession   NC_014639
Coordinates   1800179..1800787 (+) Length   202 a.a.
NCBI ID   WP_003325648.1    Uniprot ID   -
Organism   Bacillus atrophaeus 1942     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1795179..1805787
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BATR1942_RS08465 (BATR1942_08975) - 1796288..1796794 (-) 507 WP_003325657.1 PTS sugar transporter subunit IIA -
  BATR1942_RS08470 (BATR1942_08980) - 1796944..1797363 (+) 420 WP_003325656.1 Hsp20/alpha crystallin family protein -
  BATR1942_RS08475 (BATR1942_08985) - 1797383..1797772 (-) 390 WP_003325655.1 YppG family protein -
  BATR1942_RS08480 (BATR1942_08990) - 1797962..1798150 (+) 189 WP_003325653.1 YppF family protein -
  BATR1942_RS08485 (BATR1942_08995) - 1798181..1798555 (-) 375 WP_003325652.1 YppE family protein -
  BATR1942_RS08490 (BATR1942_09000) - 1798597..1798842 (-) 246 WP_003325651.1 DUF5446 family protein -
  BATR1942_RS08495 (BATR1942_09005) sspM 1799043..1799147 (+) 105 WP_003325650.1 acid-soluble spore protein SspM -
  BATR1942_RS08500 (BATR1942_09010) - 1799174..1800136 (-) 963 WP_087941807.1 DUF2515 domain-containing protein -
  BATR1942_RS08505 (BATR1942_09015) recU 1800179..1800787 (+) 609 WP_003325648.1 Holliday junction resolvase RecU Machinery gene
  BATR1942_RS08510 (BATR1942_09020) - 1800825..1803578 (+) 2754 WP_003325647.1 PBP1A family penicillin-binding protein -
  BATR1942_RS08515 (BATR1942_09025) - 1803670..1804161 (-) 492 WP_003325646.1 YpoC family protein -
  BATR1942_RS08520 (BATR1942_09030) nth 1804158..1804817 (-) 660 WP_003325645.1 endonuclease III -
  BATR1942_RS08525 (BATR1942_09035) dnaD 1804836..1805534 (-) 699 WP_003325644.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 23625.96 Da        Isoelectric Point: 9.9112

>NTDB_id=38768 BATR1942_RS08505 WP_003325648.1 1800179..1800787(+) (recU) [Bacillus atrophaeus 1942]
MIRYPNGKTFQPKKTVSSQNRQKKPLSYSNRGMTLEDDLNETNKYYLAKQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGLYKGRYIDFEAKETKNTTSFPLQNFHDHQIEHMKQVTAQDGICFVIISAFGQVYFLEAEKLFYFWERKE
KNGRKSIRKDELNEAAFPISLGYSPRIDYISIIEKLYFSPNP

Nucleotide


Download         Length: 609 bp        

>NTDB_id=38768 BATR1942_RS08505 WP_003325648.1 1800179..1800787(+) (recU) [Bacillus atrophaeus 1942]
GTGATTCGGTATCCCAACGGAAAAACGTTTCAGCCGAAAAAAACGGTTTCATCCCAAAATAGGCAAAAAAAGCCGCTATC
ATACAGTAATCGCGGCATGACCCTCGAAGATGACTTAAATGAAACGAATAAGTATTATCTAGCAAAGCAAATTGCCGTGA
TTCACAAAAAACCGACGCCCGTGCAAATTGTAAATGTCCATTATCCAAAAAGAAGCGCAGCTGTCATCAAAGAAGCCTAT
TTTAAGCAGTCATCAACAACTGACTATAATGGACTTTACAAAGGCCGGTATATTGATTTTGAAGCAAAGGAAACGAAAAA
TACAACCTCCTTCCCTTTGCAAAACTTTCATGATCACCAAATTGAGCATATGAAGCAGGTAACGGCTCAAGACGGAATTT
GTTTTGTTATTATATCCGCTTTCGGCCAAGTTTATTTTTTAGAGGCTGAAAAGCTGTTTTACTTCTGGGAAAGAAAAGAA
AAGAACGGCAGAAAGTCGATTCGGAAAGACGAATTAAATGAAGCCGCTTTTCCAATTTCACTTGGATACTCGCCAAGAAT
TGATTATATTAGTATTATTGAAAAGCTTTATTTTTCGCCAAACCCATAA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

90.05

99.505

0.896

Multiple sequence alignment