Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   HHJ26_RS03905 Genome accession   NZ_CP051735
Coordinates   822480..823907 (+) Length   475 a.a.
NCBI ID   WP_000980604.1    Uniprot ID   -
Organism   Escherichia coli strain SCU-108     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 817480..828907
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HHJ26_RS03865 (HHJ26_03865) yeeW 817664..817858 (+) 195 WP_000988601.1 DUF5983 family protein -
  HHJ26_RS03870 (HHJ26_03870) - 817904..817984 (+) 81 Protein_772 hypothetical protein -
  HHJ26_RS03875 (HHJ26_03875) - 818273..818419 (-) 147 Protein_773 transposase domain-containing protein -
  HHJ26_RS03880 (HHJ26_03880) - 818473..818655 (+) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  HHJ26_RS03885 (HHJ26_03885) tmaR 818756..819085 (-) 330 WP_000450409.1 DUF496 family protein -
  HHJ26_RS03890 (HHJ26_03890) yeeA 819257..820315 (-) 1059 WP_001200890.1 FUSC family protein -
  HHJ26_RS03895 (HHJ26_03895) sbmC 820513..820986 (-) 474 WP_001105376.1 DNA gyrase inhibitor SbmC -
  HHJ26_RS03900 (HHJ26_03900) dacD 821105..822271 (-) 1167 WP_001297905.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  HHJ26_RS03905 (HHJ26_03905) sbcB 822480..823907 (+) 1428 WP_000980604.1 exodeoxyribonuclease I Machinery gene
  HHJ26_RS03910 (HHJ26_03910) plaP 823981..825339 (-) 1359 WP_000019194.1 putrescine/proton symporter PlaP -
  HHJ26_RS03915 (HHJ26_03915) yoeI 825329..825391 (-) 63 WP_010723108.1 membrane protein YoeI -
  HHJ26_RS03920 (HHJ26_03920) yeeY 825606..826535 (-) 930 WP_000803363.1 LysR substrate-binding domain-containing protein -
  HHJ26_RS03925 (HHJ26_03925) yeeZ 826581..827405 (-) 825 WP_000754737.1 SDR family oxidoreductase -
  HHJ26_RS03930 (HHJ26_03930) yoeB 827488..827742 (-) 255 WP_000767826.1 type II toxin-antitoxin system mRNA interferase toxin YoeB -
  HHJ26_RS03935 (HHJ26_03935) yefM 827739..827990 (-) 252 WP_071686836.1 YoeB-YefM toxin-antitoxin system antitoxin YefM -
  HHJ26_RS03940 (HHJ26_03940) hisL 828273..828323 (+) 51 WP_001364200.1 his operon leader peptide -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54442.73 Da        Isoelectric Point: 5.4720

>NTDB_id=387639 HHJ26_RS03905 WP_000980604.1 822480..823907(+) (sbcB) [Escherichia coli strain SCU-108]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSENVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=387639 HHJ26_RS03905 WP_000980604.1 822480..823907(+) (sbcB) [Escherichia coli strain SCU-108]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCTCGGGCGAAAGGAGAAAAC
GAAGCCGCATTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAGCTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAGCCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTACTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTAAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGAGAACGTGGATGCACAGCTTTATAATGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAACTGTTGTTCAATTATCGAGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTGCAGGGCTACGCTGATGAATTGCAGATGCTGGCACAACAGT
ATGCCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTGA

Domains

Predicted by InterProScan.

Exonuclease C-terminal (ExoI_SH3)

(212-472)

Exonuclease (RNase_T)

(13-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.936

98.947

0.583

Multiple sequence alignment