Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   BATR1942_RS04820 Genome accession   NC_014639
Coordinates   974510..974788 (+) Length   92 a.a.
NCBI ID   WP_003329146.1    Uniprot ID   -
Organism   Bacillus atrophaeus 1942     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 969510..979788
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BATR1942_RS04805 (BATR1942_04985) - 970705..971619 (+) 915 WP_013390497.1 ketopantoate reductase family protein -
  BATR1942_RS04810 (BATR1942_04990) - 971650..972882 (-) 1233 WP_013390498.1 aminopeptidase -
  BATR1942_RS21240 (BATR1942_04995) - 972984..973118 (-) 135 WP_010788482.1 protein YkpC -
  BATR1942_RS04815 (BATR1942_05000) mreBH 973220..974227 (-) 1008 WP_013390499.1 cell shape-determining protein MreBH -
  BATR1942_RS04820 (BATR1942_05005) abrB 974510..974788 (+) 279 WP_003329146.1 transcriptional regulator AbhA Regulator
  BATR1942_RS04825 (BATR1942_05010) - 975000..976286 (+) 1287 WP_003329145.1 ATP-binding protein -
  BATR1942_RS04830 (BATR1942_05015) - 976299..977138 (+) 840 WP_003329144.1 gamma-glutamylcyclotransferase -
  BATR1942_RS04835 (BATR1942_05020) ktrC 977188..977853 (+) 666 WP_010788485.1 Ktr system potassium transporter KtrC -
  BATR1942_RS04840 (BATR1942_05025) ade 978022..979749 (+) 1728 WP_003329142.1 adenine deaminase -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10211.03 Da        Isoelectric Point: 6.9804

>NTDB_id=38763 BATR1942_RS04820 WP_003329146.1 974510..974788(+) (abrB) [Bacillus atrophaeus 1942]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIVLKKYKPHGVCLMTGEITTENKEYGNGKIILSPEGAQ
QLLDEIQAALKA

Nucleotide


Download         Length: 279 bp        

>NTDB_id=38763 BATR1942_RS04820 WP_003329146.1 974510..974788(+) (abrB) [Bacillus atrophaeus 1942]
ATGAAATCAATTGGTGTTGTAAGAAAAGTAGATGAACTTGGCCGTATTGTTATGCCGATAGAATTAAGAAGAGCGTTAGA
TATTGCGATTAAAGACAGTATTGAGTTCTTTGTAGACGGAGATAAGATCGTCTTGAAAAAATATAAGCCGCACGGCGTGT
GTTTAATGACAGGGGAAATTACGACAGAAAATAAAGAATACGGCAATGGAAAAATCATTTTAAGTCCAGAAGGCGCACAG
CAGCTGCTTGACGAAATTCAAGCTGCTTTAAAAGCATAA

Domains

Predicted by InterproScan.

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)

AbrB C-terminal domain (AbrB_C)

(53-88)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

58.242

98.913

0.576

Multiple sequence alignment