Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   BATR1942_RS04705 Genome accession   NC_014639
Coordinates   950124..950699 (+) Length   191 a.a.
NCBI ID   WP_003327252.1    Uniprot ID   -
Organism   Bacillus atrophaeus 1942     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 945124..955699
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BATR1942_RS04675 (BATR1942_04855) dapD 945245..945955 (+) 711 WP_003327258.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase -
  BATR1942_RS04680 (BATR1942_04860) - 946028..947152 (+) 1125 WP_003327257.1 N-acetyldiaminopimelate deacetylase -
  BATR1942_RS04685 (BATR1942_04865) - 947213..947458 (+) 246 WP_003327256.1 YkuS family protein -
  BATR1942_RS04690 (BATR1942_04870) - 947497..948300 (-) 804 WP_003327255.1 mechanosensitive ion channel family protein -
  BATR1942_RS04695 (BATR1942_04875) ahpA 948550..949092 (+) 543 WP_003327254.1 biofilm-specific peroxidase AhpA -
  BATR1942_RS04700 (BATR1942_04880) - 949177..949635 (+) 459 WP_003327253.1 TlpA family protein disulfide reductase -
  BATR1942_RS04705 (BATR1942_04885) rok 950124..950699 (+) 576 WP_003327252.1 transcriptional regulator Rok Regulator
  BATR1942_RS04710 (BATR1942_04890) - 950745..951704 (-) 960 WP_003327251.1 hypothetical protein -
  BATR1942_RS04715 (BATR1942_04895) - 951848..952432 (+) 585 WP_003327250.1 molybdenum cofactor guanylyltransferase -
  BATR1942_RS04720 (BATR1942_04900) - 952504..953523 (+) 1020 WP_003327249.1 MoeB/ThiF family adenylyltransferase -
  BATR1942_RS04725 (BATR1942_04905) glp 953542..954834 (+) 1293 WP_003327248.1 gephyrin-like molybdotransferase Glp -
  BATR1942_RS04730 (BATR1942_04910) mobB 954795..955319 (+) 525 WP_003327247.1 molybdopterin-guanine dinucleotide biosynthesis protein B -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 21713.65 Da        Isoelectric Point: 9.8783

>NTDB_id=38762 BATR1942_RS04705 WP_003327252.1 950124..950699(+) (rok) [Bacillus atrophaeus 1942]
MFNEREALRLRLEQLNEAEVKVIREYQIERDKIYAKLRELDRNGSSAAETKKDFRPERKSESLPVLAELAAQEIRSYQPQ
QASQPQPQSISSIPAGIPDGTTRRRRGTARPGSKAAKLREAAIKTLKRHNAAIKSSELQKEIEKESGLEIPNMTTFMQSL
IKMYPEVKKPYRGQYILEGEIASDSAENVTE

Nucleotide


Download         Length: 576 bp        

>NTDB_id=38762 BATR1942_RS04705 WP_003327252.1 950124..950699(+) (rok) [Bacillus atrophaeus 1942]
ATGTTTAATGAGAGGGAAGCTTTACGCTTGCGTTTGGAACAGTTAAATGAGGCTGAGGTTAAAGTCATCCGTGAATATCA
AATAGAGCGTGACAAAATATATGCAAAACTAAGAGAGCTTGACCGCAATGGAAGCTCAGCAGCGGAAACAAAAAAAGATT
TTCGCCCTGAAAGAAAAAGTGAGTCTCTTCCTGTGCTAGCCGAGCTCGCAGCACAAGAGATCAGAAGCTATCAGCCGCAG
CAGGCATCACAGCCGCAGCCGCAATCCATCTCTTCTATTCCGGCGGGTATTCCGGACGGAACGACAAGAAGAAGAAGAGG
AACGGCAAGACCGGGTTCAAAGGCAGCAAAGCTTCGTGAAGCGGCAATCAAAACATTAAAACGCCATAACGCAGCGATCA
AAAGCTCCGAACTTCAAAAGGAAATTGAGAAGGAAAGCGGGCTTGAAATCCCTAATATGACAACGTTTATGCAAAGTTTA
ATTAAAATGTATCCGGAAGTGAAAAAGCCATATCGCGGCCAGTACATTTTAGAAGGCGAAATCGCTTCAGACTCTGCTGA
AAATGTGACTGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

86.598

100

0.88

Multiple sequence alignment