Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   HHJ27_RS22190 Genome accession   NZ_CP051733
Coordinates   4695344..4696012 (-) Length   222 a.a.
NCBI ID   WP_001297375.1    Uniprot ID   P65957
Organism   Escherichia coli strain SCU-109     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4690344..4701012
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HHJ27_RS22160 (HHJ27_22160) rfaQ 4690522..4691580 (-) 1059 WP_001521608.1 lipopolysaccharide core heptosyltransferase RfaQ -
  HHJ27_RS22165 (HHJ27_22165) waaA 4691993..4693270 (+) 1278 WP_000891564.1 lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase -
  HHJ27_RS22170 (HHJ27_22170) coaD 4693278..4693757 (+) 480 WP_001171866.1 pantetheine-phosphate adenylyltransferase -
  HHJ27_RS22175 (HHJ27_22175) mutM 4693796..4694605 (-) 810 WP_001114542.1 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase -
  HHJ27_RS22180 (HHJ27_22180) rpmG 4694703..4694870 (-) 168 WP_001051798.1 50S ribosomal protein L33 -
  HHJ27_RS22185 (HHJ27_22185) rpmB 4694891..4695127 (-) 237 WP_000091955.1 50S ribosomal protein L28 -
  HHJ27_RS22190 (HHJ27_22190) radC 4695344..4696012 (-) 669 WP_001297375.1 DNA repair protein RadC Machinery gene
  HHJ27_RS22195 (HHJ27_22195) coaBC 4696184..4697404 (+) 1221 WP_000050171.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  HHJ27_RS22200 (HHJ27_22200) dut 4697382..4697840 (+) 459 WP_000976070.1 dUTP diphosphatase -
  HHJ27_RS22205 (HHJ27_22205) slmA 4697947..4698543 (+) 597 WP_000818601.1 nucleoid occlusion factor SlmA -
  HHJ27_RS22210 (HHJ27_22210) pyrE 4698580..4699221 (-) 642 WP_000806177.1 orotate phosphoribosyltransferase -
  HHJ27_RS22215 (HHJ27_22215) rph 4699287..4700003 (-) 717 WP_001247093.1 ribonuclease PH -
  HHJ27_RS22220 (HHJ27_22220) yicC 4700130..4700993 (+) 864 WP_000621336.1 YicC/YloC family endoribonuclease -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 25258.35 Da        Isoelectric Point: 7.9748

>NTDB_id=387618 HHJ27_RS22190 WP_001297375.1 4695344..4696012(-) (radC) [Escherichia coli strain SCU-109]
MKNNAQLLMPREKMLKFGISALTDVELLALFLRTGTRGKDVLTLAKEMLENFGSLYGLLTSEYEQFSGVHGIGVAKFAQL
KGIAELARRYYNVRMREESPLLSPEMTREFLQSQLTGEEREIFMVIFLDSQHRVITHSRLFSGTLNHVEVHPREIIREAI
KINASALILAHNHPSGCAEPSKADKLITERIIKSCQFMDLRVLDHIVIGRGEYVSFAERGWI

Nucleotide


Download         Length: 669 bp        

>NTDB_id=387618 HHJ27_RS22190 WP_001297375.1 4695344..4696012(-) (radC) [Escherichia coli strain SCU-109]
GTGAAAAACAATGCACAGCTGTTGATGCCGCGCGAAAAAATGCTGAAGTTTGGTATTAGCGCCTTAACGGATGTCGAGCT
GCTGGCGCTATTTCTGCGTACCGGAACGCGCGGTAAAGATGTATTAACCCTGGCAAAAGAGATGCTGGAGAATTTCGGCT
CTCTTTATGGCTTGTTAACCTCTGAATATGAACAATTTAGTGGTGTTCATGGAATTGGCGTGGCGAAATTTGCCCAGTTA
AAGGGGATTGCTGAACTAGCGCGGCGTTACTACAACGTGCGGATGCGTGAAGAAAGCCCTTTACTCAGCCCGGAGATGAC
GCGGGAATTTTTACAAAGCCAGCTCACGGGGGAGGAGCGGGAGATCTTTATGGTGATCTTTCTCGACTCACAACACCGGG
TTATAACGCATAGCCGTCTTTTTTCCGGCACGCTAAACCATGTTGAAGTCCATCCTCGGGAAATTATCCGCGAAGCGATA
AAAATAAATGCCTCGGCGCTGATCCTTGCACATAATCACCCTTCGGGTTGTGCTGAACCCAGTAAAGCGGATAAACTCAT
TACTGAACGGATAATAAAGAGTTGTCAGTTCATGGATTTACGCGTGCTCGACCATATCGTGATTGGGCGTGGAGAGTATG
TTTCTTTTGCCGAACGCGGCTGGATTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(103-220)

UPF0758 N-terminal (UPF0758_N)

(9-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P65957

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

49.55

100

0.496

Multiple sequence alignment