Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   BATR1942_RS04600 Genome accession   NC_014639
Coordinates   932845..933309 (-) Length   154 a.a.
NCBI ID   WP_003327274.1    Uniprot ID   -
Organism   Bacillus atrophaeus 1942     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 927845..938309
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BATR1942_RS04585 (BATR1942_04760) - 928291..930111 (+) 1821 WP_003327278.1 PAS domain-containing protein -
  BATR1942_RS04590 (BATR1942_04765) - 930134..931303 (-) 1170 WP_003327277.1 aminotransferase A -
  BATR1942_RS21770 (BATR1942_04770) - 931509..931670 (-) 162 WP_003327276.1 hypothetical protein -
  BATR1942_RS04595 (BATR1942_04775) cheV 931880..932791 (+) 912 WP_003327275.1 chemotaxis protein CheV -
  BATR1942_RS04600 (BATR1942_04780) kre 932845..933309 (-) 465 WP_003327274.1 YkyB family protein Regulator
  BATR1942_RS04605 (BATR1942_04785) - 933432..934727 (-) 1296 WP_003327273.1 MFS transporter -
  BATR1942_RS04610 (BATR1942_04790) - 934803..935300 (-) 498 WP_087941879.1 L,D-transpeptidase family protein -
  BATR1942_RS04615 (BATR1942_04795) - 935436..936296 (-) 861 WP_003327270.1 metallophosphoesterase -
  BATR1942_RS04620 (BATR1942_04800) fadH 936442..937206 (+) 765 WP_003327269.1 2,4-dienoyl-CoA reductase -
  BATR1942_RS22500 - 937282..937416 (+) 135 Protein_936 hypothetical protein -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 17942.68 Da        Isoelectric Point: 10.4207

>NTDB_id=38761 BATR1942_RS04600 WP_003327274.1 932845..933309(-) (kre) [Bacillus atrophaeus 1942]
MDDHAYTKDLRPTIENLSKAVYTVNRHAKTAPNPKYLYTLKKRALQKLVKEGKGKKVGLHFSKNPRFSQQQSDVLISIGD
YYFHMPPTKEDFEHLPHLGTLNQSYRNPKAQMSLTKAKNLLQDYVGMKEKPFVTNRQQPTYHKPVFKKLGESYF

Nucleotide


Download         Length: 465 bp        

>NTDB_id=38761 BATR1942_RS04600 WP_003327274.1 932845..933309(-) (kre) [Bacillus atrophaeus 1942]
ATGGACGACCATGCATATACGAAAGATCTGCGGCCAACCATCGAAAATCTTTCAAAAGCTGTCTACACTGTGAACCGCCA
TGCAAAAACCGCCCCCAACCCTAAATACCTTTATACTTTGAAAAAACGGGCTTTACAAAAGCTGGTGAAAGAAGGTAAAG
GAAAGAAAGTAGGGCTTCATTTTTCAAAAAATCCAAGGTTTAGCCAACAGCAATCGGACGTGCTCATCTCAATCGGAGAC
TACTATTTTCACATGCCTCCAACAAAAGAAGACTTCGAACACCTTCCGCATTTAGGTACGCTAAATCAATCGTACCGGAA
TCCTAAAGCTCAAATGTCTTTAACAAAAGCGAAAAACCTTTTGCAAGATTATGTCGGCATGAAAGAAAAACCGTTTGTCA
CAAATCGGCAGCAGCCAACTTACCATAAACCTGTTTTCAAAAAGCTTGGAGAAAGTTACTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(13-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

94.156

100

0.942

Multiple sequence alignment