Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   FOB42_RS06165 Genome accession   NZ_CP044089
Coordinates   1325530..1326969 (+) Length   479 a.a.
NCBI ID   WP_003818176.1    Uniprot ID   -
Organism   Bordetella bronchiseptica strain FDAARGOS_634     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1320530..1331969
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOB42_RS06150 (FOB42_06150) - 1321416..1322699 (+) 1284 WP_004565898.1 amidase -
  FOB42_RS06155 (FOB42_06155) leuA 1322751..1324457 (-) 1707 WP_003818182.1 2-isopropylmalate synthase -
  FOB42_RS06160 (FOB42_06160) - 1324884..1325531 (-) 648 WP_003815907.1 hypothetical protein -
  FOB42_RS06165 (FOB42_06165) rpoN/rpoN1 1325530..1326969 (+) 1440 WP_003818176.1 RNA polymerase factor sigma-54 Machinery gene
  FOB42_RS06170 (FOB42_06170) - 1327062..1327364 (+) 303 WP_003815905.1 bacterioferritin-associated ferredoxin -
  FOB42_RS06175 (FOB42_06175) - 1327392..1328270 (-) 879 WP_033459661.1 LysR substrate-binding domain-containing protein -
  FOB42_RS06180 (FOB42_06180) - 1328378..1329307 (+) 930 WP_015042041.1 DMT family transporter -
  FOB42_RS06185 (FOB42_06185) bfr 1329646..1330122 (+) 477 WP_003815898.1 bacterioferritin -
  FOB42_RS06190 (FOB42_06190) - 1330204..1330887 (-) 684 WP_003815897.1 hypothetical protein -

Sequence

Protein


Download         Length: 479 a.a.        Molecular weight: 52322.51 Da        Isoelectric Point: 4.8131

>NTDB_id=387586 FOB42_RS06165 WP_003818176.1 1325530..1326969(+) (rpoN/rpoN1) [Bordetella bronchiseptica strain FDAARGOS_634]
MQNIVPMTRPALELRPGQHLTLTPQLQQSIRLLQLSSLELEAELSQALAENPLLERDEDPAREEQADPEREASVEADEAP
DTELRLDEMPGSGGVHPDDDSDLPQAARPDTLREHLLGQLALTRAAPRDVALCGLLIDELDENGYLDSPLEEILTWLPAE
AQADLDELRAALALLQSFDPAGIGARDMAECLQLQLRQPDPARLPEAADAEVLACARRICAQHLPLLATGNVARVREAVQ
CDEAVVRAAHALILRLEPRPGRAWTVPAADYAIPDVIVRRTRQGWQAVLNSAVVPRLHVNAVYAQVLGGQRQGGNAGLQA
QLQQARWMIRNVEQRFDTILRVAQAIVAHQQAFFSQGPAAMRPLILKDIAGELDLHESTISRATTQKYMLTPFGTLELKR
FFGAGVATDGGDATSATAVQAVIRQLVADEDRGKPLSDSQIMQRLADQGIVIARRTVAKYREALRIAPATLRKAQAAGR

Nucleotide


Download         Length: 1440 bp        

>NTDB_id=387586 FOB42_RS06165 WP_003818176.1 1325530..1326969(+) (rpoN/rpoN1) [Bordetella bronchiseptica strain FDAARGOS_634]
ATGCAAAATATTGTACCTATGACTCGTCCCGCGCTAGAACTTCGTCCTGGTCAACATTTGACGTTGACCCCTCAACTGCA
ACAGTCGATCCGGCTGTTGCAGCTGTCGTCGCTGGAGCTGGAGGCCGAACTGTCGCAGGCGCTGGCCGAGAATCCGTTGC
TGGAACGCGACGAAGATCCGGCGCGCGAGGAGCAGGCCGACCCCGAGCGCGAGGCCTCGGTCGAGGCCGACGAGGCGCCG
GATACCGAACTGCGCCTGGACGAGATGCCCGGTTCGGGCGGCGTCCATCCCGACGACGACAGCGACCTGCCGCAGGCGGC
GCGCCCGGACACCCTGCGCGAGCATCTGCTGGGGCAGCTGGCGCTGACGCGCGCCGCCCCGCGCGATGTGGCGCTGTGCG
GTCTGCTGATCGACGAACTGGACGAGAACGGCTACCTGGATTCGCCCCTGGAAGAGATCCTGACATGGCTGCCGGCCGAG
GCGCAGGCCGACCTGGACGAGCTGCGCGCGGCGCTGGCATTGCTGCAGTCGTTCGATCCGGCAGGCATCGGCGCGCGCGA
CATGGCCGAATGCCTGCAGCTGCAGTTGCGCCAGCCCGATCCGGCGCGCCTGCCCGAGGCGGCCGATGCCGAGGTGCTGG
CCTGTGCGCGGCGCATCTGTGCGCAGCATCTGCCCTTGCTGGCCACCGGCAACGTGGCCCGCGTGCGCGAGGCCGTGCAA
TGCGACGAGGCGGTCGTGCGCGCCGCGCACGCGCTGATCCTGCGCCTGGAGCCCCGGCCGGGCCGTGCCTGGACGGTGCC
GGCGGCCGATTACGCCATTCCCGACGTGATCGTGCGCCGCACCCGCCAGGGCTGGCAGGCGGTGCTCAACAGCGCTGTCG
TGCCGCGGCTGCACGTCAATGCCGTCTATGCGCAAGTGCTGGGCGGCCAGCGCCAGGGCGGCAACGCCGGCCTGCAGGCG
CAACTGCAGCAGGCGCGCTGGATGATCCGCAACGTGGAGCAGCGCTTCGACACCATCCTGCGCGTGGCGCAGGCGATCGT
GGCGCATCAGCAGGCGTTCTTCAGCCAGGGGCCGGCGGCCATGCGGCCGTTGATCCTCAAGGACATCGCCGGCGAACTGG
ATCTGCACGAATCGACCATTTCACGGGCGACGACGCAGAAGTACATGCTCACACCGTTCGGCACGCTGGAGCTCAAGCGC
TTCTTCGGCGCGGGCGTGGCCACCGACGGCGGCGACGCCACCTCGGCCACCGCGGTGCAGGCGGTGATCCGCCAGCTGGT
GGCCGACGAGGATCGCGGCAAGCCCTTGTCGGACAGCCAGATCATGCAGCGCCTGGCCGACCAGGGCATCGTCATCGCTC
GCCGCACGGTGGCCAAGTACCGCGAGGCGCTGCGTATCGCGCCCGCGACGCTACGCAAGGCCCAGGCGGCGGGTCGTTAG

Domains

Predicted by InterproScan.

Sigma-54, DNA binding domain (Sigma54_DBD)

(318-473)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(106-303)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(12-55)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

48.221

100

0.509

Multiple sequence alignment