Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   HHJ27_RS13830 Genome accession   NZ_CP051733
Coordinates   2909118..2910545 (+) Length   475 a.a.
NCBI ID   WP_074158036.1    Uniprot ID   -
Organism   Escherichia coli strain SCU-109     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2904118..2915545
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HHJ27_RS13790 (HHJ27_13790) yeeW 2904302..2904496 (+) 195 WP_000988600.1 DUF5983 family protein -
  HHJ27_RS13795 (HHJ27_13795) - 2904542..2904622 (+) 81 Protein_2723 hypothetical protein -
  HHJ27_RS13800 (HHJ27_13800) - 2904911..2905057 (-) 147 Protein_2724 transposase domain-containing protein -
  HHJ27_RS13805 (HHJ27_13805) - 2905111..2905293 (+) 183 WP_001016349.1 EutP/PduV family microcompartment system protein -
  HHJ27_RS13810 (HHJ27_13810) tmaR 2905394..2905723 (-) 330 WP_000450409.1 DUF496 family protein -
  HHJ27_RS13815 (HHJ27_13815) yeeA 2905895..2906953 (-) 1059 WP_064770506.1 FUSC family protein -
  HHJ27_RS13820 (HHJ27_13820) sbmC 2907151..2907624 (-) 474 WP_001105414.1 DNA gyrase inhibitor SbmC -
  HHJ27_RS13825 (HHJ27_13825) dacD 2907743..2908909 (-) 1167 WP_000830156.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  HHJ27_RS13830 (HHJ27_13830) sbcB 2909118..2910545 (+) 1428 WP_074158036.1 exodeoxyribonuclease I Machinery gene
  HHJ27_RS13835 (HHJ27_13835) tsuB 2910588..2910815 (-) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  HHJ27_RS13840 (HHJ27_13840) tsuA 2910829..2911887 (-) 1059 WP_064770505.1 thiosulfate utilization transporter TsuA/YeeE -
  HHJ27_RS13845 (HHJ27_13845) plaP 2912066..2913424 (-) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  HHJ27_RS13850 (HHJ27_13850) yoeI 2913414..2913476 (-) 63 WP_010723108.1 membrane protein YoeI -
  HHJ27_RS13855 (HHJ27_13855) yeeY 2913691..2914620 (-) 930 WP_000803366.1 LysR substrate-binding domain-containing protein -
  HHJ27_RS13860 (HHJ27_13860) yeeZ 2914666..2915490 (-) 825 WP_000754737.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54555.90 Da        Isoelectric Point: 5.4720

>NTDB_id=387585 HHJ27_RS13830 WP_074158036.1 2909118..2910545(+) (sbcB) [Escherichia coli strain SCU-109]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDIWPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=387585 HHJ27_RS13830 WP_074158036.1 2909118..2910545(+) (sbcB) [Escherichia coli strain SCU-109]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CTGATGACTATTTACCCCAGCCAGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACATTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCAAAGCTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTGGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAGCCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGCGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGGATTGAAAAGCTGTTGTTCAATTATCGGGCACGCAACTTCCCAGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTATTCACACCCGAGTTTTTACAAGGCTATGCAGAAGAGATTCAGATGCTGGCGCAGCAGT
ATGCCGACGATAAAGAAAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTAG

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.723

98.947

0.581

Multiple sequence alignment