Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   FOB45_RS21215 Genome accession   NZ_CP044086
Coordinates   2989267..2990628 (-) Length   453 a.a.
NCBI ID   WP_125887188.1    Uniprot ID   -
Organism   Pseudomonas luteola strain FDAARGOS_637     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2984267..2995628
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOB45_RS21195 (FOB45_21195) yjiA 2985254..2986231 (-) 978 WP_150347979.1 GTPase -
  FOB45_RS21200 (FOB45_21200) - 2986300..2986503 (-) 204 WP_010797159.1 YbdD/YjiX family protein -
  FOB45_RS21205 (FOB45_21205) - 2986516..2988582 (-) 2067 WP_074822916.1 carbon starvation CstA family protein -
  FOB45_RS21210 (FOB45_21210) - 2988891..2989256 (+) 366 WP_010797157.1 PilZ domain-containing protein -
  FOB45_RS21215 (FOB45_21215) radA 2989267..2990628 (-) 1362 WP_125887188.1 DNA repair protein RadA Machinery gene
  FOB45_RS21220 (FOB45_21220) - 2990728..2991303 (-) 576 WP_208825648.1 ankyrin repeat domain-containing protein -
  FOB45_RS21225 (FOB45_21225) - 2991512..2993053 (-) 1542 WP_150347981.1 catalase -
  FOB45_RS21230 (FOB45_21230) - 2993223..2993459 (-) 237 WP_010797153.1 DUF465 domain-containing protein -
  FOB45_RS21235 (FOB45_21235) mscL 2993663..2994109 (+) 447 WP_150347982.1 large-conductance mechanosensitive channel protein MscL -
  FOB45_RS21240 (FOB45_21240) - 2994154..2994930 (-) 777 WP_122043394.1 ferredoxin--NADP reductase -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 48467.91 Da        Isoelectric Point: 6.6983

>NTDB_id=387573 FOB45_RS21215 WP_125887188.1 2989267..2990628(-) (radA) [Pseudomonas luteola strain FDAARGOS_637]
MAKAKRMYGCTECGATFPKWAGQCGECGAWNTLVETVVESAPGASGRGGWAGQQAVLKTLAEVSVEETPRFTTDSTELDR
VLGGGLVDGSVVLIGGDPGIGKSTILLQTLCRIAERMPALYVTGEESQQQVAMRARRLGLPEDKLKVMTETSIESIIATA
RQEKPRVMVVDSIQTIFTEHLQSAPGGVAQVRESAALLVRFAKQTGTAVFLVGHVTKEGALAGPRVLEHMVDTVLYFEGE
SDGRLRLLRAVKNRFGAVNELGVFGMTDKGLKEVSNPSAIFLTRAQEAVPGSVVMATWEGSRPMLVEVQALVDTSHLANP
RRVTVGLDQNRLAMLLAVLHRHGGIPTYDQDVFINVVGGVKVLETAVDLALMAAVISSLRDRPLPHDLLVFGEIGLSGEI
RPVPSGQERLKEAAKHGFKRAIVPKGNAPKEAPAGLEVVAVTRLDQALDALFE

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=387573 FOB45_RS21215 WP_125887188.1 2989267..2990628(-) (radA) [Pseudomonas luteola strain FDAARGOS_637]
ATGGCCAAAGCCAAGCGCATGTACGGCTGCACAGAGTGCGGCGCAACGTTTCCCAAATGGGCAGGGCAGTGTGGCGAGTG
CGGCGCCTGGAACACGCTTGTCGAAACGGTTGTTGAGTCAGCGCCCGGTGCCTCCGGCCGTGGCGGCTGGGCGGGCCAGC
AGGCCGTGCTCAAGACATTGGCCGAGGTCAGCGTTGAGGAAACTCCACGCTTCACTACAGACTCCACAGAGCTGGACCGC
GTATTGGGTGGTGGCTTGGTCGATGGGTCGGTTGTGCTGATCGGCGGTGATCCAGGCATTGGTAAATCCACCATTTTGCT
ACAGACGCTTTGCCGCATTGCCGAGCGTATGCCAGCACTTTATGTGACAGGCGAAGAGTCCCAGCAACAGGTGGCCATGC
GGGCCCGGCGTCTTGGGCTGCCGGAAGACAAACTCAAGGTCATGACCGAGACGAGCATCGAGAGCATCATCGCCACGGCA
CGTCAGGAAAAGCCGCGGGTCATGGTAGTGGACTCCATCCAGACCATTTTTACTGAGCATCTTCAATCCGCACCGGGTGG
CGTTGCTCAGGTGCGTGAAAGCGCGGCACTTCTGGTGCGTTTTGCCAAACAGACCGGAACGGCTGTGTTTTTGGTCGGAC
ATGTGACGAAGGAAGGTGCCCTGGCGGGTCCGCGCGTGCTTGAGCACATGGTGGACACCGTTCTGTATTTCGAGGGCGAA
TCGGATGGCCGTCTGCGTTTGCTTCGGGCAGTGAAAAACCGCTTCGGTGCTGTAAATGAGCTGGGTGTTTTCGGAATGAC
CGATAAAGGCCTGAAGGAAGTATCCAACCCGTCGGCCATTTTTCTGACCCGTGCACAAGAGGCCGTGCCAGGCAGTGTGG
TCATGGCTACTTGGGAAGGCTCTCGACCAATGCTGGTTGAGGTACAGGCCCTGGTCGATACCAGTCACTTGGCCAACCCG
CGTCGGGTGACGGTCGGTCTCGATCAGAACCGTCTGGCCATGCTGTTGGCCGTACTGCACCGCCATGGCGGCATTCCCAC
CTATGACCAGGACGTGTTTATAAATGTCGTTGGCGGTGTGAAGGTGTTGGAAACAGCTGTGGACCTGGCCTTAATGGCAG
CGGTTATCTCCAGCCTACGTGACCGCCCCTTGCCCCACGACCTGCTGGTCTTTGGCGAGATCGGTCTTTCGGGTGAGATT
CGTCCAGTGCCCAGTGGACAGGAGCGCTTGAAGGAAGCCGCCAAGCATGGCTTCAAGCGCGCCATCGTACCTAAAGGCAA
TGCGCCCAAGGAGGCACCCGCTGGTCTTGAAGTGGTCGCAGTGACCCGTCTTGACCAGGCGCTGGATGCCTTATTCGAGT
AA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(72-219)

Subunit ChlI of Mg-chelatase (ChlI)

(347-427)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.339

100

0.494
  radA Streptococcus pneumoniae Rx1

45.852

100

0.464
  radA Streptococcus pneumoniae D39

45.852

100

0.464
  radA Streptococcus pneumoniae TIGR4

45.852

100

0.464
  radA Streptococcus pneumoniae R6

45.852

100

0.464
  radA Streptococcus mitis NCTC 12261

45.633

100

0.461
  radA Streptococcus mitis SK321

45.815

100

0.459

Multiple sequence alignment