Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   HHJ27_RS05480 Genome accession   NZ_CP051733
Coordinates   1162261..1162866 (+) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain SCU-109     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1157261..1167866
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HHJ27_RS05450 (HHJ27_05450) rsmS 1157963..1158127 (-) 165 WP_000051143.1 pleiotropic regulatory protein RsmS -
  HHJ27_RS05455 (HHJ27_05455) priC 1158141..1158668 (-) 528 WP_001522038.1 primosomal replication protein N'' -
  HHJ27_RS05460 (HHJ27_05460) ybaN 1158738..1159115 (+) 378 WP_001188905.1 DUF454 family protein -
  HHJ27_RS05465 (HHJ27_05465) apt 1159268..1159819 (+) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  HHJ27_RS05470 (HHJ27_05470) dnaX 1159948..1161879 (+) 1932 WP_000122013.1 DNA polymerase III subunit gamma/tau -
  HHJ27_RS05475 (HHJ27_05475) ybaB 1161932..1162261 (+) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  HHJ27_RS05480 (HHJ27_05480) recR 1162261..1162866 (+) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  HHJ27_RS05485 (HHJ27_05485) htpG 1162976..1164850 (+) 1875 WP_000678201.1 molecular chaperone HtpG -
  HHJ27_RS05490 (HHJ27_05490) adk 1165031..1165675 (+) 645 WP_001220233.1 adenylate kinase -
  HHJ27_RS05495 (HHJ27_05495) hemH 1165807..1166769 (+) 963 WP_001250117.1 ferrochelatase -
  HHJ27_RS05500 (HHJ27_05500) aes 1166766..1167725 (-) 960 WP_000764314.1 acetyl esterase -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=387565 HHJ27_RS05480 WP_001195025.1 1162261..1162866(+) (recR) [Escherichia coli strain SCU-109]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=387565 HHJ27_RS05480 WP_001195025.1 1162261..1162866(+) (recR) [Escherichia coli strain SCU-109]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACCTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGCGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCAGACGGGGCAGTTTTCAGGCCGTTATTTTGT
GTTGATGGGGCACCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGCCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAACCCCACTGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443