Detailed information    

insolico Bioinformatically predicted

Overview

Name   rec2   Type   Machinery gene
Locus tag   FOB52_RS06275 Genome accession   NZ_CP044077
Coordinates   1303720..1306113 (+) Length   797 a.a.
NCBI ID   WP_150332077.1    Uniprot ID   -
Organism   Pasteurella multocida strain FDAARGOS_644     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1298720..1311113
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOB52_RS06250 (FOB52_06250) - 1298941..1299651 (-) 711 WP_096743091.1 vancomycin high temperature exclusion protein -
  FOB52_RS06255 (FOB52_06255) - 1299814..1300896 (+) 1083 WP_010906895.1 homoserine O-acetyltransferase -
  FOB52_RS06260 (FOB52_06260) folK 1300883..1301380 (-) 498 WP_010906894.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  FOB52_RS06265 (FOB52_06265) pcnB 1301392..1302897 (-) 1506 WP_010906893.1 polynucleotide adenylyltransferase PcnB -
  FOB52_RS06270 (FOB52_06270) dksA 1302985..1303422 (-) 438 WP_010906892.1 RNA polymerase-binding protein DksA -
  FOB52_RS06275 (FOB52_06275) rec2 1303720..1306113 (+) 2394 WP_150332077.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  FOB52_RS06280 (FOB52_06280) msbA 1306167..1307915 (+) 1749 WP_115098447.1 lipid A ABC transporter ATP-binding protein/permease MsbA -
  FOB52_RS06285 (FOB52_06285) lpxK 1307946..1308923 (+) 978 WP_150332078.1 tetraacyldisaccharide 4'-kinase -
  FOB52_RS06290 (FOB52_06290) - 1308935..1309117 (+) 183 WP_096743090.1 Trm112 family protein -
  FOB52_RS06295 (FOB52_06295) kdsB 1309119..1309895 (+) 777 WP_150332079.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 797 a.a.        Molecular weight: 91085.40 Da        Isoelectric Point: 9.8674

>NTDB_id=387518 FOB52_RS06275 WP_150332077.1 1303720..1306113(+) (rec2) [Pasteurella multocida strain FDAARGOS_644]
MKNALLSISVVTVFSACSLLWLPEHVLLHWHMTLLVFALLLVSIIICVLCGKNHWISPLIFVLSSVGILGYIHDQARQTL
LQADLIAQLPRKIETEFKIIEVLQQKNYQTFVVSAQLIPQQAKQKMILQWHAQEKAQIGEVWKGELRLRPISSRLNMGGF
DKQQWYFAKGITAYATVKSAVKISEQLSWREKWLQETIKQTSTLDYQGLLIALAFGERAWLPTDIWQTYQKTNTAHVIAI
SGLHIGLAMGIGYFFIRFIQFVLPLKWVTPTLPIFVGLLFAWFYAELAGFTIPTTRAFFALAVVTLLRFWRRFYSVWQLL
LLVVALLLLANPLIVLSSSFWLSVSAVSALIIWYQIFPFSLLHWRGKSLTEGPWRKCCWFFSLLHLQLGLLWLFTPVQLL
LFQGISLTSFMANVLVVPIYSVILVPLILFAVITQGAFSSWFLANTVAKQVTILLTPLQSHWVVFSQREILCLIAILALS
FIILIWYLYDFKKESLKCYIKVPRFFHLHQMRQLNPSLKWKIYSLATVISLYCFLQVLYKEISQPLWRLDTLDVGQGLAN
LIVVNGKGVLYDTGASWAGGSMAELEIIPYLQREGIALEQVILSHDDNDHVGGAETILKHYPQAKLMTASAQHYGKTDRT
FCEAGKTWTWQHLTFKALSPTKTVKRAKNTDSCVLLISDGSYHILLTGDADIAAEKQFVKQLSQLDVLQVGHHGSKTSTG
YELLYQTRPKIALISSGRWNPWQFPHVQVVQRLKRYQTTVYNTGELGQISLLFHAKHIEIQTARTDFSPWYRRLIGL

Nucleotide


Download         Length: 2394 bp        

>NTDB_id=387518 FOB52_RS06275 WP_150332077.1 1303720..1306113(+) (rec2) [Pasteurella multocida strain FDAARGOS_644]
ATGAAAAACGCTCTTTTGTCAATATCTGTTGTGACTGTATTCAGTGCCTGTTCGTTACTTTGGCTGCCTGAACATGTCTT
GCTCCATTGGCATATGACATTGTTAGTCTTCGCATTATTGCTTGTTAGCATAATCATTTGTGTTCTTTGTGGCAAAAATC
ACTGGATTTCGCCTTTGATCTTTGTACTGAGTTCAGTAGGCATTTTAGGCTATATCCACGATCAAGCTCGTCAGACATTA
TTGCAAGCGGACTTGATTGCTCAACTGCCTCGAAAGATAGAGACAGAATTTAAAATCATTGAAGTATTACAACAAAAAAA
CTATCAAACTTTTGTAGTTTCGGCACAATTGATACCGCAACAGGCAAAACAAAAAATGATTCTTCAATGGCACGCGCAAG
AAAAAGCACAGATTGGCGAGGTTTGGAAAGGAGAATTACGACTCAGACCGATTTCATCAAGGCTCAATATGGGCGGTTTT
GATAAACAGCAATGGTATTTCGCCAAAGGCATTACCGCTTATGCGACGGTAAAAAGTGCGGTTAAAATAAGTGAACAGTT
ATCTTGGCGAGAAAAATGGTTACAAGAAACGATAAAACAGACTTCAACATTAGATTATCAAGGACTGCTAATCGCGTTGG
CTTTTGGTGAACGGGCATGGTTACCCACAGATATTTGGCAAACTTATCAAAAAACTAACACCGCACATGTGATTGCCATA
TCGGGTTTACATATTGGACTTGCGATGGGAATAGGTTATTTTTTTATCCGTTTCATTCAGTTTGTGTTGCCATTAAAGTG
GGTGACACCAACCTTACCAATATTCGTAGGGCTTCTTTTTGCCTGGTTTTATGCGGAGCTAGCGGGTTTTACTATACCGA
CGACAAGAGCATTTTTCGCTCTCGCCGTTGTCACTTTGCTACGATTCTGGCGGCGATTTTATAGTGTTTGGCAACTTCTT
TTATTGGTAGTTGCTTTGTTATTGTTAGCAAATCCCTTAATTGTTTTATCCAGTAGCTTTTGGCTGTCAGTGAGCGCAGT
CAGTGCTCTGATTATTTGGTACCAAATATTCCCCTTCTCGTTATTACACTGGCGAGGAAAAAGTCTTACAGAGGGTCCTT
GGCGAAAATGTTGTTGGTTCTTTAGTCTTCTTCATTTACAACTTGGCTTATTATGGCTTTTTACCCCTGTTCAATTATTG
CTTTTTCAGGGAATATCTTTAACGAGCTTTATGGCGAATGTGCTTGTCGTCCCTATTTATAGTGTGATTTTAGTACCATT
GATTTTATTTGCGGTGATCACACAAGGGGCTTTTTCCTCTTGGTTTCTCGCAAATACTGTCGCGAAACAGGTCACGATAC
TTTTAACGCCATTACAATCCCATTGGGTTGTCTTCTCACAGCGGGAAATACTCTGTCTGATCGCGATCTTAGCTTTAAGC
TTTATTATATTGATTTGGTATCTGTATGATTTTAAAAAAGAATCACTTAAGTGCTATATCAAAGTGCCGCGTTTTTTTCA
TCTTCATCAAATGCGACAGTTAAATCCGTCTTTAAAATGGAAAATTTATTCCCTTGCTACAGTCATCAGTCTTTATTGTT
TTTTACAGGTACTTTATAAGGAGATATCTCAACCCCTTTGGCGTTTAGATACGCTCGATGTGGGGCAGGGGTTAGCTAAC
CTGATTGTCGTGAATGGGAAAGGGGTTTTGTATGATACGGGGGCATCTTGGGCGGGAGGAAGTATGGCAGAACTAGAAAT
CATCCCTTATTTACAAAGAGAGGGGATTGCGTTAGAACAGGTGATTTTAAGCCATGATGATAATGATCATGTTGGGGGCG
CGGAAACAATTCTAAAACATTACCCTCAAGCGAAGCTGATGACGGCGTCTGCTCAACATTACGGAAAAACTGACCGCACT
TTTTGTGAAGCCGGTAAAACCTGGACTTGGCAACACTTAACATTCAAAGCCCTTTCACCGACTAAAACAGTGAAGCGAGC
GAAAAATACGGACTCTTGTGTGTTACTGATCTCAGATGGTTCTTATCATATCCTCTTAACGGGCGATGCAGATATTGCTG
CGGAAAAGCAGTTTGTGAAGCAGTTAAGTCAACTTGATGTGTTACAAGTTGGACATCATGGCAGTAAAACCTCAACTGGA
TATGAACTGCTTTATCAAACACGACCAAAAATCGCGCTGATTTCAAGTGGTCGTTGGAATCCATGGCAATTTCCACATGT
TCAGGTTGTACAACGACTTAAACGTTATCAAACGACAGTATATAACACTGGCGAGTTAGGACAAATTAGCTTACTTTTTC
ATGCTAAACACATCGAAATTCAAACCGCAAGAACGGATTTTTCGCCTTGGTATCGTAGATTAATTGGCTTGTAA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(213-487)

Domain of unknown function (DUF4131) (DUF4131)

(31-180)

Metallo-beta-lactamase superfamily (Lactamase_B)

(554-736)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rec2 Haemophilus influenzae Rd KW20

50.877

100

0.509

Multiple sequence alignment