Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   HHJ28_RS16300 Genome accession   NZ_CP051727
Coordinates   3395960..3396565 (-) Length   201 a.a.
NCBI ID   WP_001195024.1    Uniprot ID   -
Organism   Escherichia coli strain SCU-111     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3390960..3401565
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HHJ28_RS16280 (HHJ28_16280) aes 3391114..3392082 (+) 969 WP_000801824.1 acetyl esterase -
  HHJ28_RS16285 (HHJ28_16285) hemH 3392057..3393019 (-) 963 WP_001250114.1 ferrochelatase -
  HHJ28_RS16290 (HHJ28_16290) adk 3393151..3393795 (-) 645 WP_001313630.1 adenylate kinase -
  HHJ28_RS16295 (HHJ28_16295) htpG 3393976..3395850 (-) 1875 WP_000678201.1 molecular chaperone HtpG -
  HHJ28_RS16300 (HHJ28_16300) recR 3395960..3396565 (-) 606 WP_001195024.1 recombination mediator RecR Machinery gene
  HHJ28_RS16305 (HHJ28_16305) ybaB 3396565..3396894 (-) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  HHJ28_RS16310 (HHJ28_16310) dnaX 3396947..3398878 (-) 1932 WP_000122032.1 DNA polymerase III subunit gamma/tau -
  HHJ28_RS16315 (HHJ28_16315) apt 3399007..3399558 (-) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  HHJ28_RS16320 (HHJ28_16320) ybaN 3399711..3400088 (-) 378 WP_001188900.1 DUF454 family protein -
  HHJ28_RS16325 (HHJ28_16325) priC 3400158..3400685 (+) 528 WP_000844854.1 primosomal replication protein N'' -
  HHJ28_RS16330 (HHJ28_16330) rsmS 3400699..3400860 (+) 162 WP_000051146.1 pleiotropic regulatory protein RsmS -
  HHJ28_RS24865 - 3400913..3401011 (-) 99 Protein_3242 hypothetical protein -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.04 Da        Isoelectric Point: 5.0822

>NTDB_id=387517 HHJ28_RS16300 WP_001195024.1 3395960..3396565(-) (recR) [Escherichia coli strain SCU-111]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRKEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=387517 HHJ28_RS16300 WP_001195024.1 3395960..3396565(-) (recR) [Escherichia coli strain SCU-111]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACCTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTAAGGAAAAC
GGTCAAATCTGCGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCAGACGGGGCAGTTTTCAGGCCGTTATTTTGT
GTTGATGGGGCACCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGGCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAACCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGTGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443