Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   HHJ28_RS05295 Genome accession   NZ_CP051727
Coordinates   1115963..1116478 (+) Length   171 a.a.
NCBI ID   WP_001130208.1    Uniprot ID   Q8FEP8
Organism   Escherichia coli strain SCU-111     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1110963..1121478
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HHJ28_RS05250 (HHJ28_05250) csrA 1111819..1112004 (+) 186 WP_000906486.1 carbon storage regulator CsrA -
  HHJ28_RS05280 (HHJ28_05280) yqaB 1113193..1113759 (+) 567 WP_000273309.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  HHJ28_RS05285 (HHJ28_05285) yqaA 1113756..1114184 (+) 429 WP_001287452.1 YqaA family protein -
  HHJ28_RS05290 (HHJ28_05290) gshA 1114257..1115813 (+) 1557 WP_000611804.1 glutamate--cysteine ligase -
  HHJ28_RS05295 (HHJ28_05295) luxS 1115963..1116478 (+) 516 WP_001130208.1 S-ribosylhomocysteine lyase Regulator
  HHJ28_RS05300 (HHJ28_05300) emrB 1116542..1118080 (-) 1539 WP_001296316.1 multidrug efflux MFS transporter permease subunit EmrB -
  HHJ28_RS05305 (HHJ28_05305) emrA 1118097..1119269 (-) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  HHJ28_RS05310 (HHJ28_05310) emrR 1119396..1119926 (-) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  HHJ28_RS05320 (HHJ28_05320) ygaH 1120017..1120352 (-) 336 WP_000119749.1 L-valine transporter subunit YgaH -
  HHJ28_RS05325 (HHJ28_05325) ygaZ 1120342..1121079 (-) 738 WP_000445658.1 L-valine exporter subunit YgaZ -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19443.21 Da        Isoelectric Point: 5.0362

>NTDB_id=387489 HHJ28_RS05295 WP_001130208.1 1115963..1116478(+) (luxS) [Escherichia coli strain SCU-111]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARNILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=387489 HHJ28_RS05295 WP_001130208.1 1115963..1116478(+) (luxS) [Escherichia coli strain SCU-111]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCAAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGCGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTCGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAACATTCTGGAACGTGACGTGCGCATCAACAGCAACGAAGAACTGGCG
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATTTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8FEP8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.684

100

0.737