Detailed information NTG0387486

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: HHJ28_RS05000
• Genome accession: NZ_CP051727
• Coordinates: 1060212..1061204 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain SCU-111
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1055212..1066204

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HHJ28_RS04970 (HHJ28_04970)	ispD	1055273..1055983 (+)	711	WP_000246149.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
HHJ28_RS04975 (HHJ28_04975)	ispF	1055983..1056462 (+)	480	WP_001219237.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
HHJ28_RS04980 (HHJ28_04980)	truD	1056459..1057508 (+)	1050	WP_000568929.1	tRNA pseudouridine(13) synthase TruD	-
HHJ28_RS04985 (HHJ28_04985)	surE	1057489..1058250 (+)	762	WP_001765074.1	5'/3'-nucleotidase SurE	-
HHJ28_RS04990 (HHJ28_04990)	pcm	1058244..1058870 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
HHJ28_RS04995 (HHJ28_04995)	nlpD	1059055..1060149 (+)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
HHJ28_RS05000 (HHJ28_05000)	rpoS	1060212..1061204 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
HHJ28_RS05005 (HHJ28_05005)	-	1061382..1061933 (-)	552	WP_001179442.1	flavodoxin family protein	-
HHJ28_RS05010 (HHJ28_05010)	-	1062158..1063201 (+)	1044	WP_001161573.1	MBL fold metallo-hydrolase	-
HHJ28_RS05015 (HHJ28_05015)	ygbN	1063344..1064708 (-)	1365	WP_000104433.1	GntP family transporter	-
HHJ28_RS05020 (HHJ28_05020)	ygbM	1064797..1065573 (-)	777	WP_001357575.1	HPr family phosphocarrier protein	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=387486 HHJ28_RS05000 WP_000081550.1 1060212..1061204(+) (rpoS) [Escherichia coli strain SCU-111]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=387486 HHJ28_RS05000 WP_000081550.1 1060212..1061204(+) (rpoS) [Escherichia coli strain SCU-111]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715