Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   FOB65_RS23770 Genome accession   NZ_CP044074
Coordinates   4817508..4818869 (+) Length   453 a.a.
NCBI ID   WP_027598463.1    Uniprot ID   A0A3D9EDP2
Organism   Pseudomonas oryzihabitans strain FDAARGOS_657     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4812508..4823869
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOB65_RS23740 (FOB65_23740) - 4813032..4813808 (+) 777 WP_027598461.1 ferredoxin--NADP reductase -
  FOB65_RS23745 (FOB65_23745) - 4814041..4815594 (+) 1554 WP_027598462.1 TerC family protein -
  FOB65_RS23750 (FOB65_23750) mscL 4815748..4816197 (-) 450 WP_042136748.1 large-conductance mechanosensitive channel protein MscL -
  FOB65_RS23755 (FOB65_23755) - 4816424..4816663 (+) 240 WP_007162691.1 YdcH family protein -
  FOB65_RS23760 (FOB65_23760) - 4816758..4816967 (+) 210 WP_007162690.1 hypothetical protein -
  FOB65_RS23765 (FOB65_23765) - 4817119..4817388 (+) 270 WP_007162689.1 hypothetical protein -
  FOB65_RS23770 (FOB65_23770) radA 4817508..4818869 (+) 1362 WP_027598463.1 DNA repair protein RadA Machinery gene
  FOB65_RS23775 (FOB65_23775) - 4818956..4819666 (+) 711 WP_150340639.1 copper resistance protein B -
  FOB65_RS23780 (FOB65_23780) - 4820066..4820431 (-) 366 WP_150340640.1 PilZ domain-containing protein -
  FOB65_RS23785 (FOB65_23785) - 4820579..4821217 (-) 639 WP_027602973.1 response regulator transcription factor -
  FOB65_RS23790 (FOB65_23790) - 4821214..4822587 (-) 1374 WP_042136754.1 cache domain-containing protein -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 48501.00 Da        Isoelectric Point: 6.8988

>NTDB_id=387480 FOB65_RS23770 WP_027598463.1 4817508..4818869(+) (radA) [Pseudomonas oryzihabitans strain FDAARGOS_657]
MAKAKRLYGCTECGATFPKWAGQCGECGAWNTLVETVVETSAVPSGRAGWAGAQATIKTLAEVSVEETPRFTTDSTELDR
VLGGGLVDGSVVLIGGDPGIGKSTILLQTLCHLAARMPALYVTGEESQQQVAMRARRLGLPEDKLKVMTETCIESIVATA
RQEKPRVMVIDSIQTIFTEQLQSAPGGVAQVRESAALLVRFAKQTGTAIFLVGHVTKEGALAGPRVLEHMVDTVLYFEGE
SDGRLRMLRAVKNRFGAVNELGVFGMTDKGLKEVSNPSAIFLNRAQEAVAGSVVMATWEGSRPMLVEVQALVDTSHLANP
RRVTVGLDQNRLAMLLAVLHRHGSIPTYDQDVFINVVGGVKVLETAVDLALMSAVISSLRDRALPHDLLVFGEIGLSGEI
RPVPSGQERLKEAAKHGFKRAIVPKGNAPKDPPPGLQVVAVTRLEQALDALFE

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=387480 FOB65_RS23770 WP_027598463.1 4817508..4818869(+) (radA) [Pseudomonas oryzihabitans strain FDAARGOS_657]
ATGGCCAAGGCCAAGCGTCTCTACGGCTGCACCGAATGCGGCGCCACCTTTCCCAAGTGGGCGGGCCAGTGCGGTGAGTG
CGGCGCCTGGAACACCCTGGTGGAAACCGTCGTCGAGACCTCCGCTGTCCCTTCCGGACGCGCCGGCTGGGCCGGAGCCC
AGGCGACCATCAAGACCCTGGCCGAGGTCAGCGTCGAGGAAACCCCGCGCTTCACCACCGATTCCACCGAACTCGACCGG
GTGCTGGGTGGCGGCCTGGTGGATGGCTCCGTGGTGCTGATCGGCGGCGATCCCGGCATCGGCAAGTCCACCATCCTGCT
GCAGACCCTCTGCCACCTGGCCGCGCGCATGCCGGCGCTCTATGTCACCGGCGAGGAATCCCAGCAGCAGGTGGCCATGC
GTGCCCGCCGCCTGGGCCTGCCGGAAGACAAGCTCAAGGTCATGACCGAGACCTGCATCGAGTCCATCGTCGCCACCGCC
CGCCAGGAAAAGCCGCGGGTCATGGTGATCGACTCCATCCAGACCATCTTCACCGAGCAGCTGCAGTCCGCGCCCGGCGG
CGTGGCCCAGGTACGCGAGAGCGCGGCCCTGCTGGTGCGGTTCGCTAAGCAGACCGGCACCGCCATCTTCCTGGTCGGCC
ACGTCACCAAGGAAGGCGCCCTGGCCGGACCGCGGGTGCTGGAGCACATGGTCGACACCGTGCTCTATTTCGAGGGCGAA
TCCGACGGCCGCCTGCGCATGCTGAGAGCGGTCAAGAACCGCTTTGGCGCGGTCAACGAACTGGGCGTGTTCGGCATGAC
CGACAAGGGCCTCAAGGAGGTCTCCAACCCTTCGGCGATCTTTCTCAACCGGGCCCAGGAGGCGGTGGCCGGCAGCGTGG
TCATGGCGACCTGGGAGGGCTCGCGGCCGATGCTGGTGGAGGTGCAGGCCCTGGTGGACACCAGTCACCTGGCCAATCCG
CGGCGGGTCACCGTGGGCCTGGACCAGAATCGCCTGGCCATGCTGCTGGCGGTGCTGCACCGCCATGGCAGCATTCCCAC
CTACGATCAGGACGTCTTCATCAACGTGGTCGGCGGGGTCAAGGTGCTGGAGACGGCGGTGGACTTGGCGCTGATGTCGG
CGGTGATCTCCAGCCTGAGGGACCGCGCCCTGCCGCACGACCTGCTGGTGTTCGGCGAGATCGGCCTGTCTGGTGAGATC
CGCCCGGTGCCCAGTGGCCAGGAACGGCTCAAGGAGGCGGCCAAGCACGGCTTCAAGCGGGCCATCGTGCCCAAGGGCAA
TGCGCCCAAGGACCCGCCACCCGGCTTGCAGGTGGTCGCGGTGACGCGTCTGGAGCAGGCGCTGGATGCCCTGTTCGAAT
AG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(350-427)

AAA domain (AAA_25)

(71-219)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3D9EDP2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.018

100

0.481
  radA Streptococcus mitis SK321

46.696

100

0.468
  radA Streptococcus mitis NCTC 12261

46.476

100

0.466
  radA Streptococcus pneumoniae Rx1

46.476

100

0.466
  radA Streptococcus pneumoniae D39

46.476

100

0.466
  radA Streptococcus pneumoniae R6

46.476

100

0.466
  radA Streptococcus pneumoniae TIGR4

46.476

100

0.466

Multiple sequence alignment