Detailed information NTG0387442

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: FOB70_RS25210
• Genome accession: NZ_CP044071
• Coordinates: 3227775..3228764 (+)
• Length: 329 a.a.
• NCBI ID: WP_005478537.1
• Uniprot ID: A8D8R0
• Organism: Vibrio parahaemolyticus strain FDAARGOS_662
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3222775..3233764

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FOB70_RS25175 (FOB70_25175)	ftsB	3222783..3223064 (+)	282	WP_005455577.1	cell division protein FtsB	-
FOB70_RS25180 (FOB70_25180)	ispD	3223066..3223770 (+)	705	WP_005493934.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
FOB70_RS25185 (FOB70_25185)	ispF	3223788..3224264 (+)	477	WP_005493937.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
FOB70_RS25190 (FOB70_25190)	truD	3224311..3225354 (+)	1044	WP_005493940.1	tRNA pseudouridine(13) synthase TruD	-
FOB70_RS25195 (FOB70_25195)	surE	3225354..3226130 (+)	777	WP_005493942.1	5'/3'-nucleotidase SurE	-
FOB70_RS25200 (FOB70_25200)	-	3226130..3226756 (+)	627	WP_005455562.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
FOB70_RS25205 (FOB70_25205)	-	3226771..3227694 (+)	924	WP_005455560.1	peptidoglycan DD-metalloendopeptidase family protein	-
FOB70_RS25210 (FOB70_25210)	rpoS	3227775..3228764 (+)	990	WP_005478537.1	RNA polymerase sigma factor RpoS	Regulator
FOB70_RS25215 (FOB70_25215)	mutS	3228844..3231405 (-)	2562	WP_005493944.1	DNA mismatch repair protein MutS	-
FOB70_RS25220 (FOB70_25220)	pncC	3231490..3231972 (+)	483	WP_005493945.1	nicotinamide-nucleotide amidase	-
FOB70_RS25225 (FOB70_25225)	recA	3232173..3233216 (+)	1044	WP_005478550.1	recombinase RecA	Machinery gene

Sequence

Protein

• Length: 329 a.a.
• Molecular weight: 37560.38 Da
• Isoelectric Point: 4.6096

>NTDB_id=387442 FOB70_RS25210 WP_005478537.1 3227775..3228764(+) (rpoS) [Vibrio parahaemolyticus strain FDAARGOS_662]
MSISNTVSKVEEFEYDNASETTIDNELEKSSSTTEGKTAVREEFDASSKSLDATQLYLGEIGFSPLLTAEEEVLYARRAL
RGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRT
IRLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVEDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDANNS
DPEVSTQDDDIKSSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGREIGLTRERVRQIQVEGLRRLREILIKQGLNM
ENLFNVEDD

Nucleotide

• Length: 990 bp

>NTDB_id=387442 FOB70_RS25210 WP_005478537.1 3227775..3228764(+) (rpoS) [Vibrio parahaemolyticus strain FDAARGOS_662]
ATGAGTATCAGCAACACAGTATCCAAAGTTGAAGAGTTTGAATACGACAATGCGTCAGAGACGACCATTGATAACGAACT
CGAAAAATCATCATCTACTACCGAAGGCAAAACAGCTGTCCGTGAAGAGTTTGACGCGAGCAGTAAAAGCCTAGACGCAA
CTCAATTGTATCTAGGTGAAATTGGCTTCTCACCTCTACTTACTGCTGAAGAAGAAGTCCTTTACGCCCGCAGAGCATTG
CGTGGTGATGAAGCGGCTCGTAAGCGCATGATCGAAAGTAACTTGCGTTTAGTAGTAAAAATTTCTCGTCGGTACAGCAA
CCGTGGCCTAGCGCTACTCGATCTTATTGAAGAAGGTAACCTCGGCTTGATCCGAGCGGTTGAAAAATTCGATCCAGAAA
GAGGCTTCCGTTTCTCAACTTACGCAACATGGTGGATCCGTCAAACGATCGAACGTGCGTTGATGAACCAAACTCGCACC
ATTCGCTTGCCTATTCATGTCGTGAAAGAGCTGAACATTTATCTGCGTACTGCGCGTGAACTTTCTCAAAAGCTCGATCA
TGAACCAACTGCAGAAGAAATTGCTGCTCAATTAGATATACCAGTAGAAGATGTCAGTAAAATGCTGCGTCTTAACGAGC
GTATTAGCTCCGTTGATACCCCAATTGGTGGTGACGGTGAAAAAGCGCTTCTGGATATTATTCCTGACGCAAACAACTCT
GATCCAGAAGTGTCGACTCAAGATGATGACATCAAATCGTCTTTGATCCATTGGTTGGAAGAGTTGAATCCAAAACAAAA
AGAAGTGCTTGCACGCCGTTTTGGTTTGCTTGGTTATGAGCCGTCTACACTTGAAGAAGTGGGACGAGAGATTGGTCTTA
CTCGTGAGCGTGTACGTCAAATTCAAGTGGAGGGTTTACGTCGACTTCGTGAAATTCTAATTAAACAAGGCCTAAATATG
GAAAACTTGTTTAACGTCGAAGACGATTAA

Domains

Predicted by InterproScan.

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (52-85)

• Sigma-70 region 2 (Sigma70_r2) (90-159)

• Sigma-70, region 4 (Sigma70_r4) (258-311)

• Sigma-70 region 3 (Sigma70_r3) (170-243)

3D structure

• AlphaFold DB: A8D8R0

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	83.832	100	0.851