Detailed information
Bioinformatically predicted
Overview
| Name | pilN | Type | Machinery gene |
| Locus tag | FOB70_RS24040 | Genome accession | NZ_CP044071 |
| Coordinates | 3007454..3008032 (+) | Length | 192 a.a. |
| NCBI ID | WP_005496569.1 | Uniprot ID | A0AAX0M4K7 |
| Organism | Vibrio parahaemolyticus strain FDAARGOS_662 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 3002454..3013032
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FOB70_RS24025 (FOB70_24025) | oxyR | 3002777..3003685 (+) | 909 | WP_005465160.1 | DNA-binding transcriptional regulator OxyR | - |
| FOB70_RS24030 (FOB70_24030) | - | 3003741..3006311 (-) | 2571 | WP_005496567.1 | penicillin-binding protein 1A | - |
| FOB70_RS24035 (FOB70_24035) | pilM | 3006454..3007470 (+) | 1017 | WP_005496568.1 | type IV pilus biogenesis protein PilM | Machinery gene |
| FOB70_RS24040 (FOB70_24040) | pilN | 3007454..3008032 (+) | 579 | WP_005496569.1 | PilN domain-containing protein | Machinery gene |
| FOB70_RS24045 (FOB70_24045) | pilO | 3008025..3008618 (+) | 594 | WP_005496571.1 | type 4a pilus biogenesis protein PilO | Machinery gene |
| FOB70_RS24050 (FOB70_24050) | pilP | 3008608..3009123 (+) | 516 | WP_005454781.1 | pilus assembly protein PilP | Machinery gene |
| FOB70_RS24055 (FOB70_24055) | pilQ | 3009155..3010903 (+) | 1749 | WP_005488227.1 | type IV pilus secretin PilQ | Machinery gene |
| FOB70_RS24060 (FOB70_24060) | aroK | 3011092..3011610 (+) | 519 | WP_005381319.1 | shikimate kinase AroK | - |
| FOB70_RS24065 (FOB70_24065) | aroB | 3011642..3012742 (+) | 1101 | WP_005496576.1 | 3-dehydroquinate synthase | - |
Sequence
Protein
Download Length: 192 a.a. Molecular weight: 22478.98 Da Isoelectric Point: 7.0769
>NTDB_id=387433 FOB70_RS24040 WP_005496569.1 3007454..3008032(+) (pilN) [Vibrio parahaemolyticus strain FDAARGOS_662]
MLYRINLLHWRENQREEHRRRFVGLVVLGVMVALGIQWGVGKYYEYQQDLQQERLDYLTTYISDLDKRIEAMKIAELEHS
KILERLKVVEALQNGRNKTTDFMNLMPAVIPEGVYVDKIKMNDLEIEISGISDSTPRLATMLDNMERSAKLLDVEMHSIV
HGKARFGKEFQTFKVSFMFNTVEEKKEGKQHG
MLYRINLLHWRENQREEHRRRFVGLVVLGVMVALGIQWGVGKYYEYQQDLQQERLDYLTTYISDLDKRIEAMKIAELEHS
KILERLKVVEALQNGRNKTTDFMNLMPAVIPEGVYVDKIKMNDLEIEISGISDSTPRLATMLDNMERSAKLLDVEMHSIV
HGKARFGKEFQTFKVSFMFNTVEEKKEGKQHG
Nucleotide
Download Length: 579 bp
>NTDB_id=387433 FOB70_RS24040 WP_005496569.1 3007454..3008032(+) (pilN) [Vibrio parahaemolyticus strain FDAARGOS_662]
GTGCTGTATCGCATTAACTTATTGCATTGGCGCGAAAATCAAAGGGAAGAGCATCGTCGTCGATTTGTCGGTTTAGTGGT
ATTGGGCGTCATGGTAGCGTTGGGGATTCAGTGGGGCGTTGGCAAATATTATGAGTACCAACAAGATCTTCAACAAGAGC
GACTCGACTATCTAACAACGTACATTTCCGATCTAGATAAGCGGATAGAAGCGATGAAGATCGCGGAGCTTGAACACAGC
AAAATCTTGGAACGCTTGAAAGTTGTGGAAGCGTTGCAAAATGGTCGGAATAAAACCACTGATTTTATGAACCTCATGCC
TGCTGTTATTCCAGAAGGCGTGTATGTCGACAAGATCAAAATGAACGATCTAGAAATTGAAATCTCAGGTATTTCAGACA
GTACACCTCGGCTAGCAACCATGCTCGATAACATGGAGCGTTCTGCCAAGCTACTGGACGTTGAAATGCACTCTATCGTG
CACGGAAAAGCCCGTTTCGGTAAAGAGTTTCAGACCTTTAAAGTGTCCTTCATGTTCAACACGGTAGAAGAGAAGAAAGA
GGGAAAACAACATGGTTAA
GTGCTGTATCGCATTAACTTATTGCATTGGCGCGAAAATCAAAGGGAAGAGCATCGTCGTCGATTTGTCGGTTTAGTGGT
ATTGGGCGTCATGGTAGCGTTGGGGATTCAGTGGGGCGTTGGCAAATATTATGAGTACCAACAAGATCTTCAACAAGAGC
GACTCGACTATCTAACAACGTACATTTCCGATCTAGATAAGCGGATAGAAGCGATGAAGATCGCGGAGCTTGAACACAGC
AAAATCTTGGAACGCTTGAAAGTTGTGGAAGCGTTGCAAAATGGTCGGAATAAAACCACTGATTTTATGAACCTCATGCC
TGCTGTTATTCCAGAAGGCGTGTATGTCGACAAGATCAAAATGAACGATCTAGAAATTGAAATCTCAGGTATTTCAGACA
GTACACCTCGGCTAGCAACCATGCTCGATAACATGGAGCGTTCTGCCAAGCTACTGGACGTTGAAATGCACTCTATCGTG
CACGGAAAAGCCCGTTTCGGTAAAGAGTTTCAGACCTTTAAAGTGTCCTTCATGTTCAACACGGTAGAAGAGAAGAAAGA
GGGAAAACAACATGGTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilN | Vibrio campbellii strain DS40M4 |
83.333 |
100 |
0.833 |
| pilN | Vibrio cholerae strain A1552 |
62.431 |
94.271 |
0.589 |