Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   HHJ29_RS17300 Genome accession   NZ_CP051725
Coordinates   3614600..3615205 (-) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain SCU-112     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3609600..3620205
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HHJ29_RS17280 (HHJ29_17295) aes 3609741..3610700 (+) 960 WP_000801819.1 acetyl esterase -
  HHJ29_RS17285 (HHJ29_17300) hemH 3610697..3611659 (-) 963 WP_001250114.1 ferrochelatase -
  HHJ29_RS17290 (HHJ29_17305) adk 3611791..3612435 (-) 645 WP_001313630.1 adenylate kinase -
  HHJ29_RS17295 (HHJ29_17310) htpG 3612616..3614490 (-) 1875 WP_000678210.1 molecular chaperone HtpG -
  HHJ29_RS17300 (HHJ29_17315) recR 3614600..3615205 (-) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  HHJ29_RS17305 (HHJ29_17320) ybaB 3615205..3615534 (-) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  HHJ29_RS17310 (HHJ29_17325) dnaX 3615587..3617518 (-) 1932 WP_000122015.1 DNA polymerase III subunit gamma/tau -
  HHJ29_RS17315 (HHJ29_17330) apt 3617647..3618198 (-) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  HHJ29_RS17320 (HHJ29_17335) ybaN 3618351..3618728 (-) 378 WP_001188900.1 DUF454 family protein -
  HHJ29_RS17325 (HHJ29_17340) priC 3618798..3619325 (+) 528 WP_000858961.1 primosomal replication protein N'' -
  HHJ29_RS17330 (HHJ29_17345) rsmS 3619339..3619500 (+) 162 WP_000051146.1 pleiotropic regulatory protein RsmS -
  HHJ29_RS25430 - 3619553..3619651 (-) 99 Protein_3442 hypothetical protein -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=387431 HHJ29_RS17300 WP_001195025.1 3614600..3615205(-) (recR) [Escherichia coli strain SCU-112]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=387431 HHJ29_RS17300 WP_001195025.1 3614600..3615205(-) (recR) [Escherichia coli strain SCU-112]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGTCACTGCGCCGATTGCCGCACCTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCACGTCGTCAGGAAAAC
GGTCAAATCTGCGTGGTGGAGAGTCCGGCGGACATTTACGCCATTGAGCAGACGGGGCAGTTTTCAGGTCGTTATTTTGT
GTTGATGGGACACCTGTCACCGCTGGACGGCATCGGTCCTGATGATATCGGGCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAACCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGTGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443

Multiple sequence alignment