Detailed information NTG0387423

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: FOB70_RS20550
• Genome accession: NZ_CP044071
• Coordinates: 2337290..2338297 (+)
• Length: 335 a.a.
• NCBI ID: WP_005481416.1
• Uniprot ID: A0A072GUT1
• Organism: Vibrio parahaemolyticus strain FDAARGOS_662
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 2332290..2343297

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FOB70_RS20525 (FOB70_20525)	rplC	2332824..2333453 (-)	630	WP_005456132.1	50S ribosomal protein L3	-
FOB70_RS20530 (FOB70_20530)	rpsJ	2333468..2333779 (-)	312	WP_004410492.1	30S ribosomal protein S10	-
FOB70_RS20535 (FOB70_20535)	rpmE	2334237..2334458 (-)	222	WP_005457203.1	50S ribosomal protein L31	-
FOB70_RS20545 (FOB70_20545)	priA	2334753..2336957 (+)	2205	WP_005496931.1	primosomal protein N'	-
FOB70_RS20550 (FOB70_20550)	cytR	2337290..2338297 (+)	1008	WP_005481416.1	DNA-binding transcriptional regulator CytR	Regulator
FOB70_RS20555 (FOB70_20555)	ftsN	2338473..2339018 (+)	546	WP_005496929.1	cell division protein FtsN	-
FOB70_RS20560 (FOB70_20560)	hslV	2339182..2339733 (+)	552	WP_005489705.1	ATP-dependent protease subunit HslV	-
FOB70_RS20565 (FOB70_20565)	hslU	2339757..2341088 (+)	1332	WP_005489452.1	HslU--HslV peptidase ATPase subunit	-
FOB70_RS20570 (FOB70_20570)	-	2341273..2342190 (+)	918	WP_005457195.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
FOB70_RS20575 (FOB70_20575)	rraA	2342267..2342779 (+)	513	WP_005457192.1	ribonuclease E activity regulator RraA	-
FOB70_RS20580 (FOB70_20580)	zapB	2342884..2343126 (-)	243	WP_005481417.1	cell division protein ZapB	-

Sequence

Protein

• Length: 335 a.a.
• Molecular weight: 36835.35 Da
• Isoelectric Point: 6.4938

>NTDB_id=387423 FOB70_RS20550 WP_005481416.1 2337290..2338297(+) (cytR) [Vibrio parahaemolyticus strain FDAARGOS_662]
MATMKDVAQLAGVSTATVSRALMNPEKVSSSTRKRVEDAVLEAGYSPNSLARNLRRNESKTIVTIVPDICDPYFSEIIRG
IEDAAMEHGYLVLLGDSGQQKKRESSFVNLVFTKQADGMLLLGTDLPFDVSKPEQKNLPPMVMACEFAPELELPTVHIDN
LTSAFEAVNYLTQLGHKRIAQISGPDTAVLCQFRQQGYQQALRRAGISKDPQYSVITEFSFDGGAKAVRKLLELPEPPTA
IFCHCDTMAIGAIQEAKRLGLRVPQDLSVVGFDDINFAQYCDPPLTTISQPRYEIGRQAMLMMLELLKGHDVHSGSRLLE
TKLVVRGSAAPPQRA

Nucleotide

• Length: 1008 bp

>NTDB_id=387423 FOB70_RS20550 WP_005481416.1 2337290..2338297(+) (cytR) [Vibrio parahaemolyticus strain FDAARGOS_662]
ATGGCGACAATGAAGGATGTTGCCCAGCTTGCGGGAGTGTCGACAGCTACGGTATCTCGAGCATTAATGAATCCAGAAAA
AGTCTCTTCTTCAACAAGAAAAAGAGTCGAAGATGCCGTCCTTGAAGCGGGCTATTCTCCAAATTCATTAGCGCGTAATC
TACGTAGAAACGAATCAAAAACGATTGTTACCATCGTTCCTGACATCTGTGATCCTTACTTTTCTGAAATCATTCGTGGT
ATCGAAGACGCAGCTATGGAACATGGCTACCTCGTACTACTCGGTGACAGCGGCCAGCAGAAAAAGCGTGAAAGCTCGTT
TGTGAATCTAGTGTTCACCAAACAAGCCGATGGCATGTTACTGCTTGGCACCGACCTGCCATTTGATGTCAGCAAGCCAG
AACAGAAAAACCTGCCACCAATGGTCATGGCTTGTGAGTTTGCGCCAGAGCTAGAATTACCAACCGTGCACATTGACAAC
CTAACGTCTGCTTTTGAAGCGGTCAATTACCTAACTCAACTTGGCCATAAACGCATAGCACAAATTTCAGGGCCAGACAC
AGCGGTATTGTGCCAGTTCCGCCAGCAAGGTTATCAACAAGCCTTGCGTCGCGCGGGGATCAGTAAAGACCCACAATACA
GCGTTATCACTGAGTTTTCTTTTGACGGCGGCGCGAAAGCTGTACGTAAGTTGCTAGAACTTCCAGAGCCACCAACTGCG
ATTTTCTGCCACTGTGACACCATGGCAATCGGCGCAATCCAAGAAGCGAAACGACTCGGTCTGCGCGTTCCGCAAGATCT
GTCAGTGGTTGGTTTCGATGATATCAACTTTGCTCAATACTGCGATCCACCGTTAACAACCATTTCTCAACCTCGTTATG
AAATTGGCCGCCAAGCGATGCTTATGATGCTTGAACTCCTGAAAGGCCATGACGTTCATTCAGGTTCACGCTTACTAGAA
ACTAAGCTTGTTGTCCGTGGTAGCGCAGCGCCACCGCAACGCGCCTAA

Domains

Predicted by InterproScan.

• Bacterial regulatory proteins, lacI family (LacI) (3-48)

• Periplasmic binding protein-like domain (Peripla_BP_3) (168-328)

3D structure

• AlphaFold DB: A0A072GUT1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	100	100	1
cytR	Vibrio cholerae C6706	90.719	99.701	0.904