Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   FOB71_RS20945 Genome accession   NZ_CP044069
Coordinates   2808687..2809205 (-) Length   172 a.a.
NCBI ID   WP_017421185.1    Uniprot ID   A0A087ID55
Organism   Vibrio vulnificus strain FDAARGOS_663     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2803687..2814205
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOB71_RS20920 (FOB71_20915) rimM 2803751..2804299 (-) 549 WP_017421187.1 ribosome maturation factor RimM -
  FOB71_RS20925 (FOB71_20920) rpsP 2804315..2804563 (-) 249 WP_011079541.1 30S ribosomal protein S16 -
  FOB71_RS20930 (FOB71_20925) ffh 2804880..2806256 (-) 1377 WP_011079540.1 signal recognition particle protein -
  FOB71_RS20935 (FOB71_20930) - 2806470..2807264 (+) 795 WP_011079539.1 inner membrane protein YpjD -
  FOB71_RS20940 (FOB71_20935) - 2807351..2808628 (+) 1278 WP_017421186.1 HlyC/CorC family transporter -
  FOB71_RS20945 (FOB71_20940) luxS 2808687..2809205 (-) 519 WP_017421185.1 S-ribosylhomocysteine lyase Regulator
  FOB71_RS20950 (FOB71_20945) - 2809256..2809888 (-) 633 WP_017421184.1 hypothetical protein -
  FOB71_RS20955 (FOB71_20950) gshA 2809899..2811464 (-) 1566 WP_026060800.1 glutamate--cysteine ligase -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19024.86 Da        Isoelectric Point: 5.2451

>NTDB_id=387389 FOB71_RS20945 WP_017421185.1 2808687..2809205(-) (luxS) [Vibrio vulnificus strain FDAARGOS_663]
MPLLDSFTVDHTRMHAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGFMRKHLNGASVEIIDISP
MGCRTGFYMSLIGEPTEQQVAAAWTASMEDVLKVESQNKIPELNEYQCGTAAMHSLDEAKQIAQNILAVGISVNRNDELA
LPEAMLKELKVD

Nucleotide


Download         Length: 519 bp        

>NTDB_id=387389 FOB71_RS20945 WP_017421185.1 2808687..2809205(-) (luxS) [Vibrio vulnificus strain FDAARGOS_663]
ATGCCATTATTAGATAGTTTTACCGTTGACCACACTCGCATGCATGCACCTGCGGTGCGTGTGGCAAAAACCATGCAAAC
GCCAAAAGGCGACACCATTACCGTGTTTGACTTACGCTTCACTGCACCTAACAAAGATATTTTGTCAGAGAAAGGCATTC
ACACTTTAGAGCACCTGTACGCAGGCTTTATGCGTAAGCATCTCAATGGCGCCTCGGTTGAGATCATCGATATCTCACCG
ATGGGCTGTCGTACCGGTTTCTACATGAGTTTGATTGGCGAGCCGACCGAACAACAAGTGGCGGCGGCGTGGACGGCTTC
GATGGAAGATGTGTTGAAAGTCGAAAGCCAAAACAAGATCCCTGAGTTGAACGAGTATCAGTGCGGTACCGCAGCCATGC
ATTCGCTAGATGAAGCGAAGCAAATTGCTCAAAATATCTTAGCGGTTGGTATTTCAGTCAATAGAAACGATGAACTAGCA
TTGCCAGAAGCAATGCTAAAAGAGCTCAAAGTCGATTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A087ID55

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

87.719

99.419

0.872

Multiple sequence alignment