Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   FOB71_RS13140 Genome accession   NZ_CP044069
Coordinates   1242540..1243940 (+) Length   466 a.a.
NCBI ID   WP_017428872.1    Uniprot ID   -
Organism   Vibrio vulnificus strain FDAARGOS_663     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 1237540..1248940
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOB71_RS13115 (FOB71_13110) rsxB 1238145..1238741 (-) 597 WP_011080896.1 electron transport complex subunit RsxB -
  FOB71_RS13120 (FOB71_13115) rsxA 1238743..1239321 (-) 579 WP_017428869.1 electron transport complex subunit RsxA -
  FOB71_RS13130 (FOB71_13125) - 1239919..1240107 (+) 189 WP_017428870.1 hypothetical protein -
  FOB71_RS13135 (FOB71_13130) uvrB 1240202..1242232 (+) 2031 WP_026050797.1 excinuclease ABC subunit UvrB -
  FOB71_RS13140 (FOB71_13135) luxO 1242540..1243940 (+) 1401 WP_017428872.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  FOB71_RS13145 (FOB71_13140) luxU 1243940..1244287 (+) 348 WP_017428873.1 quorum-sensing phosphorelay protein LuxU -
  FOB71_RS13150 (FOB71_13145) - 1244374..1245264 (-) 891 WP_017428874.1 YvcK family protein -
  FOB71_RS13155 (FOB71_13150) moaA 1245579..1246568 (+) 990 WP_017428875.1 GTP 3',8-cyclase MoaA -
  FOB71_RS13160 (FOB71_13155) moaB 1246647..1247159 (+) 513 WP_017428876.1 molybdenum cofactor biosynthesis protein B -
  FOB71_RS13165 (FOB71_13160) moaC 1247170..1247649 (+) 480 WP_017428877.1 cyclic pyranopterin monophosphate synthase MoaC -
  FOB71_RS13170 (FOB71_13165) moaD 1247646..1247891 (+) 246 WP_011080886.1 molybdopterin synthase sulfur carrier subunit -
  FOB71_RS13175 (FOB71_13170) moaE 1247893..1248348 (+) 456 WP_011080885.1 molybdopterin synthase catalytic subunit MoaE -

Sequence

Protein


Download         Length: 466 a.a.        Molecular weight: 52098.58 Da        Isoelectric Point: 6.2540

>NTDB_id=387376 FOB71_RS13140 WP_017428872.1 1242540..1243940(+) (luxO) [Vibrio vulnificus strain FDAARGOS_663]
MQQITTTKQRYLLMVEDTASVAALYRSYLMPLGIDINIVGTGRDAIDSLKHRIPDLILLDLRLPDMTGMDVLHAVKASHP
DVPIIFMTAHGSIDTAVEAMRHGSQDFLIKPCEADRLRVTVNNAIRKASKLKNDSDSAGSQNYQGFIGSSQKMQQVYRTI
DSAASSKASIFITGESGTGKEVCAEAIHAASRRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAATDRQGAAELADGG
TLFLDELCEMDLDLQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRER
GEDVIEIAYSLLGYMSHEEGKNFVRFSQSVIDRFNEYEWPGNVRQLQNVLRNVVVLNNGKEITMEMLPPPLNQPFERKES
AQPDLSELISVRDICPLWLTEKLAIEQAIKACDGNIPRAAGYLDVSPSTIYRKLQAWNEKEEKQKA

Nucleotide


Download         Length: 1401 bp        

>NTDB_id=387376 FOB71_RS13140 WP_017428872.1 1242540..1243940(+) (luxO) [Vibrio vulnificus strain FDAARGOS_663]
ATGCAACAAATAACGACAACGAAACAGCGTTACTTGCTGATGGTAGAAGACACCGCTTCTGTCGCAGCCCTCTATCGCTC
CTATCTCATGCCATTGGGTATCGATATCAATATCGTGGGTACTGGGCGTGACGCGATAGACAGTTTAAAACATCGCATTC
CAGATCTTATTCTGCTGGACTTACGCCTACCGGACATGACGGGAATGGACGTATTGCATGCAGTGAAAGCAAGCCACCCT
GATGTTCCTATCATTTTCATGACCGCACACGGCTCGATCGATACTGCTGTTGAAGCAATGCGACACGGCTCGCAAGATTT
CTTGATCAAACCCTGTGAAGCTGACCGACTCAGGGTCACGGTGAACAACGCTATCCGCAAGGCGAGCAAGCTAAAAAATG
ATTCAGACAGCGCCGGAAGTCAGAATTATCAAGGCTTTATCGGCAGTAGTCAAAAAATGCAGCAGGTCTACCGAACCATT
GACTCGGCGGCCAGTAGTAAAGCGAGTATTTTTATCACTGGTGAAAGTGGTACGGGTAAAGAGGTGTGCGCAGAAGCCAT
TCATGCAGCCAGTCGACGCGGAGACAAGCCATTTATCGCGATTAACTGTGCAGCGATCCCCAAGGATTTGATTGAAAGCG
AGCTATTTGGGCATGTCAAAGGTGCGTTTACTGGCGCAGCGACCGATCGCCAAGGGGCAGCAGAGCTCGCCGATGGAGGC
ACACTGTTCCTTGATGAGCTGTGTGAAATGGACCTAGATCTGCAAACAAAATTGCTGCGTTTTATCCAAACGGGTACTTT
CCAAAAAGTGGGCTCTTCAAAAATGAAGAGTGTTGACGTGCGTTTTGTGTGCGCGACAAACCGAGACCCTTGGAAAGAAG
TACAAGAAGGGCGCTTTCGTGAAGATTTGTACTACCGACTTTATGTGATTCCACTGCACTTGCCACCACTTCGTGAGCGT
GGAGAGGATGTCATTGAGATCGCTTACTCGTTACTGGGTTATATGTCACATGAGGAAGGGAAAAACTTTGTTCGTTTCTC
TCAATCTGTGATAGATAGATTTAATGAATATGAGTGGCCAGGCAATGTGCGTCAGTTACAAAATGTGCTGCGTAACGTGG
TGGTACTTAACAACGGTAAAGAGATTACCATGGAGATGTTGCCGCCTCCTTTGAATCAGCCCTTTGAACGCAAAGAAAGT
GCGCAACCTGATCTGAGTGAGTTGATTTCCGTCAGGGATATTTGTCCATTGTGGTTGACCGAGAAACTGGCGATTGAACA
AGCGATTAAAGCGTGTGATGGTAACATTCCGAGAGCCGCAGGCTATCTTGATGTCAGCCCGTCGACGATTTATCGCAAGT
TACAGGCGTGGAATGAAAAAGAAGAAAAACAGAAAGCATAA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(417-457)

Response regulator receiver domain (Response_reg)

(13-121)

Sigma-54 interaction domain (Sigma54_activat)

(147-312)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

86.323

95.708

0.826

Multiple sequence alignment