Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   HHJ31_RS20175 Genome accession   NZ_CP051719
Coordinates   4214528..4215133 (+) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain SCU-116     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4209528..4220133
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HHJ31_RS25495 - 4210082..4210180 (+) 99 Protein_3977 hypothetical protein -
  HHJ31_RS20145 (HHJ31_20150) rsmS 4210233..4210394 (-) 162 WP_000051146.1 pleiotropic regulatory protein RsmS -
  HHJ31_RS20150 (HHJ31_20155) priC 4210408..4210935 (-) 528 WP_000844868.1 primosomal replication protein N'' -
  HHJ31_RS20155 (HHJ31_20160) ybaN 4211005..4211382 (+) 378 WP_001188900.1 DUF454 family protein -
  HHJ31_RS20160 (HHJ31_20165) apt 4211535..4212086 (+) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  HHJ31_RS20165 (HHJ31_20170) dnaX 4212215..4214146 (+) 1932 WP_000122015.1 DNA polymerase III subunit gamma/tau -
  HHJ31_RS20170 (HHJ31_20175) ybaB 4214199..4214528 (+) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  HHJ31_RS20175 (HHJ31_20180) recR 4214528..4215133 (+) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  HHJ31_RS20180 (HHJ31_20185) htpG 4215243..4217117 (+) 1875 WP_000678211.1 molecular chaperone HtpG -
  HHJ31_RS20185 (HHJ31_20190) adk 4217298..4217942 (+) 645 WP_001331495.1 adenylate kinase -
  HHJ31_RS20190 (HHJ31_20195) hemH 4218074..4219036 (+) 963 WP_001250114.1 ferrochelatase -
  HHJ31_RS20195 (HHJ31_20200) aes 4219033..4219992 (-) 960 WP_000801795.1 acetyl esterase -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=387364 HHJ31_RS20175 WP_001195025.1 4214528..4215133(+) (recR) [Escherichia coli strain SCU-116]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=387364 HHJ31_RS20175 WP_001195025.1 4214528..4215133(+) (recR) [Escherichia coli strain SCU-116]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGTCACTGCGCCGATTGCCGCACCTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCACGTCGTCAGGAAAAC
GGTCAAATCTGCGTGGTGGAGAGTCCGGCGGACATTTACGCCATTGAGCAGACGGGGCAGTTTTCAGGTCGTTATTTTGT
GTTGATGGGACACCTGTCACCGCTGGACGGCATCGGTCCTGATGATATCGGGCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAACCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGTGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443

Multiple sequence alignment