Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   BBPR_RS00975 Genome accession   NC_014638
Coordinates   226719..228602 (+) Length   627 a.a.
NCBI ID   WP_013389447.1    Uniprot ID   -
Organism   Bifidobacterium bifidum PRL2010     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 221719..233602
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BBPR_RS00945 - 222902..223072 (-) 171 Protein_184 glycerophosphodiester phosphodiesterase -
  BBPR_RS10025 (BBPR_0186) - 223061..223711 (+) 651 WP_020372718.1 DUF5011 domain-containing protein -
  BBPR_RS09600 - 223708..223863 (+) 156 WP_020372719.1 LPXTG cell wall anchor domain-containing protein -
  BBPR_RS00955 (BBPR_0188) - 224099..225091 (+) 993 WP_017143196.1 aldo/keto reductase -
  BBPR_RS00965 (BBPR_0189) - 225478..225765 (-) 288 WP_003811585.1 DUF1778 domain-containing protein -
  BBPR_RS00970 (BBPR_0190) - 225970..226500 (+) 531 WP_003811587.1 MarR family winged helix-turn-helix transcriptional regulator -
  BBPR_RS00975 (BBPR_0191) rcrP 226719..228602 (+) 1884 WP_013389447.1 ABC transporter ATP-binding protein Regulator
  BBPR_RS10030 (BBPR_0192) rcrQ 228653..230593 (+) 1941 WP_047289830.1 ABC transporter ATP-binding protein Regulator

Sequence

Protein


Download         Length: 627 a.a.        Molecular weight: 68032.74 Da        Isoelectric Point: 6.0532

>NTDB_id=38736 BBPR_RS00975 WP_013389447.1 226719..228602(+) (rcrP) [Bifidobacterium bifidum PRL2010]
MLRILKYLSKAEIGQMLIALVTIVGQVFFDLKLPDYMSDITTLVETPGSAMSDIWIAGGKMLLISLGSVACAIVTGYISA
RVGSSFTQRLRSLEFRKVESYGPAEMSKFSTASLITRSTNDITQIQMFITIGLQLIVKSPIMAVWAICKIAGEGFEWTLA
TGIAVVILLVAVVIMMAMVMPKFKAMQKLTDNINLVARENLTGLRVVRAYNAEDYQEAKFTKANKDLTDTQLFTNRVMAF
MMPLMNTVLNGLMLAVYWIGAYLIDAAGLTDKLNVFSNMVVFSNYSVQVIMSFLLMSMVFVLWPRADVSAQRVLEVLDTD
PIVKTGTKTAADVARLGGGKTGTVEFRNVSFTYPGSREATLEGIDFTAEKGQTVAFIGSTGSGKSSLINLVPRFYDVSAG
QVLVDGVDVREYDLKALRDKIGYVPQQSVLFKGTVASNVSYGDDVNGASSADVEMADTSTPAGRKREAELIAAGKRAEGA
AMPAEQMNRVKAAAGVAQATEFVERMDGTYTAPIAQGGSNVSGGQKQRLSIARAVYRHPEILIFDDSFSALDFKTDREVR
DALAKEAKGSTKLIVAQRIGTIMNADRIIVLDDGKVVGQGTHQELLDACDVYRQIAESQLSQSELTA

Nucleotide


Download         Length: 1884 bp        

>NTDB_id=38736 BBPR_RS00975 WP_013389447.1 226719..228602(+) (rcrP) [Bifidobacterium bifidum PRL2010]
ATGCTTCGCATCCTGAAATACCTCTCCAAAGCGGAGATCGGTCAGATGCTCATCGCCCTGGTGACCATCGTCGGGCAGGT
CTTCTTCGACCTCAAACTGCCCGATTACATGTCAGACATCACCACGCTCGTCGAGACGCCGGGCAGCGCGATGAGCGACA
TCTGGATCGCCGGCGGCAAGATGCTGCTCATCTCCCTCGGCTCCGTCGCCTGTGCCATCGTCACCGGCTACATCTCCGCA
CGCGTCGGCTCGTCATTCACCCAGCGCCTGCGCTCGCTCGAATTCCGCAAGGTCGAATCCTATGGCCCCGCCGAAATGAG
CAAATTCTCCACCGCGAGCCTCATCACCCGCTCCACCAACGACATCACGCAGATCCAGATGTTCATCACCATCGGCCTGC
AGCTCATCGTCAAGTCGCCGATCATGGCCGTATGGGCCATATGCAAGATCGCCGGCGAAGGTTTCGAATGGACTCTCGCC
ACCGGCATCGCCGTCGTCATCCTGCTCGTCGCCGTCGTCATCATGATGGCCATGGTCATGCCCAAGTTCAAGGCCATGCA
GAAGCTCACCGACAACATCAACCTCGTGGCCCGCGAAAACCTCACCGGCCTGCGCGTCGTGCGCGCCTACAACGCCGAGG
ACTACCAGGAGGCCAAGTTCACCAAGGCCAACAAGGACCTCACCGACACGCAGCTGTTCACCAACCGCGTCATGGCGTTC
ATGATGCCGCTGATGAACACCGTCCTGAACGGCCTGATGCTCGCCGTCTACTGGATCGGCGCCTATCTGATCGACGCCGC
CGGCCTGACGGACAAGCTCAACGTGTTCTCCAACATGGTCGTCTTCTCCAACTACTCCGTGCAGGTCATCATGAGCTTCC
TGCTGATGAGCATGGTATTCGTGCTCTGGCCGCGCGCCGACGTGTCCGCGCAGCGCGTGCTCGAAGTGCTCGACACCGAT
CCGATCGTCAAAACCGGCACCAAGACCGCCGCCGACGTGGCGCGTCTGGGCGGCGGGAAAACCGGCACCGTCGAGTTCCG
CAATGTGAGCTTCACCTACCCCGGCTCACGCGAGGCGACGCTCGAAGGCATCGACTTCACCGCCGAAAAGGGCCAGACCG
TCGCGTTCATCGGCTCCACCGGCTCCGGCAAGTCCAGCCTCATCAACCTCGTGCCGCGCTTCTACGACGTGTCGGCCGGG
CAGGTGCTCGTCGACGGTGTGGACGTGCGCGAATACGATCTGAAAGCCCTTCGCGACAAGATCGGATACGTGCCGCAGCA
GTCCGTGCTGTTCAAGGGCACGGTCGCATCCAACGTGAGCTACGGCGACGACGTGAACGGGGCAAGCTCCGCGGACGTCG
AAATGGCCGACACCTCCACTCCGGCCGGCCGCAAACGCGAAGCCGAACTCATCGCCGCGGGCAAGAGAGCGGAAGGCGCC
GCAATGCCGGCTGAACAGATGAACCGGGTCAAGGCGGCGGCCGGCGTCGCTCAGGCCACCGAGTTCGTCGAGCGCATGGA
CGGCACATACACCGCCCCGATCGCACAAGGCGGGTCCAACGTCTCCGGCGGCCAGAAGCAGCGCCTGTCAATCGCGCGCG
CCGTCTACCGCCACCCCGAAATCCTGATCTTCGACGACTCGTTCTCCGCGCTCGACTTCAAGACCGACCGCGAAGTTCGC
GACGCACTCGCCAAAGAAGCCAAGGGATCCACCAAGCTGATCGTCGCCCAGCGCATCGGCACGATCATGAACGCCGACCG
CATCATCGTGCTCGATGACGGCAAGGTCGTCGGTCAAGGCACCCATCAGGAACTGCTCGACGCCTGCGATGTCTACCGTC
AGATCGCCGAATCCCAGCTCAGTCAGTCGGAACTGACCGCGTGA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(18-292)

ABC transporter (ABC_tran)

(361-547)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

47.567

100

0.483

Multiple sequence alignment