Detailed information NTG0387309

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: HHJ31_RS08115
• Genome accession: NZ_CP051719
• Coordinates: 1672576..1673568 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain SCU-116
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1667576..1678568

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HHJ31_RS08095 (HHJ31_08095)	ygbM	1668207..1668983 (+)	777	WP_001136908.1	HPr family phosphocarrier protein	-
HHJ31_RS08100 (HHJ31_08100)	ygbN	1669072..1670436 (+)	1365	WP_000104443.1	GntP family transporter	-
HHJ31_RS08105 (HHJ31_08105)	-	1670579..1671622 (-)	1044	WP_001161578.1	MBL fold metallo-hydrolase	-
HHJ31_RS08110 (HHJ31_08110)	-	1671847..1672398 (+)	552	WP_001179442.1	flavodoxin family protein	-
HHJ31_RS08115 (HHJ31_08115)	rpoS	1672576..1673568 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
HHJ31_RS08120 (HHJ31_08120)	nlpD	1673631..1674725 (-)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
HHJ31_RS08125 (HHJ31_08125)	pcm	1674910..1675536 (-)	627	WP_000254701.1	protein-L-isoaspartate O-methyltransferase	-
HHJ31_RS08130 (HHJ31_08130)	surE	1675530..1676291 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
HHJ31_RS08135 (HHJ31_08135)	truD	1676272..1677321 (-)	1050	WP_000568928.1	tRNA pseudouridine(13) synthase TruD	-
HHJ31_RS08140 (HHJ31_08140)	ispF	1677318..1677797 (-)	480	WP_001219247.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
HHJ31_RS08145 (HHJ31_08145)	ispD	1677797..1678507 (-)	711	WP_000246149.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=387309 HHJ31_RS08115 WP_000081550.1 1672576..1673568(-) (rpoS) [Escherichia coli strain SCU-116]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=387309 HHJ31_RS08115 WP_000081550.1 1672576..1673568(-) (rpoS) [Escherichia coli strain SCU-116]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTACTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAATAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715