Detailed information NTG0387309

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: FOB75_RS15730
• Genome accession: NZ_CP044062
• Coordinates: 3089638..3090627 (+)
• Length: 329 a.a.
• NCBI ID: WP_025632114.1
• Uniprot ID: -
• Organism: Vibrio parahaemolyticus strain FDAARGOS_667
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3084638..3095627

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FOB75_RS15695 (FOB75_15695)	ftsB	3084646..3084927 (+)	282	WP_005455577.1	cell division protein FtsB	-
FOB75_RS15700 (FOB75_15700)	ispD	3084929..3085633 (+)	705	WP_005478544.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
FOB75_RS15705 (FOB75_15705)	ispF	3085651..3086127 (+)	477	WP_005380896.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
FOB75_RS15710 (FOB75_15710)	truD	3086174..3087217 (+)	1044	WP_069499719.1	tRNA pseudouridine(13) synthase TruD	-
FOB75_RS15715 (FOB75_15715)	surE	3087217..3087993 (+)	777	WP_150334545.1	5'/3'-nucleotidase SurE	-
FOB75_RS15720 (FOB75_15720)	-	3087993..3088619 (+)	627	WP_005455562.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
FOB75_RS15725 (FOB75_15725)	-	3088634..3089557 (+)	924	WP_005455560.1	peptidoglycan DD-metalloendopeptidase family protein	-
FOB75_RS15730 (FOB75_15730)	rpoS	3089638..3090627 (+)	990	WP_025632114.1	RNA polymerase sigma factor RpoS	Regulator
FOB75_RS15735 (FOB75_15735)	mutS	3090707..3093268 (-)	2562	WP_025535213.1	DNA mismatch repair protein MutS	-
FOB75_RS15740 (FOB75_15740)	pncC	3093353..3093835 (+)	483	WP_021450025.1	nicotinamide-nucleotide amidase	-
FOB75_RS15745 (FOB75_15745)	recA	3094036..3095079 (+)	1044	WP_005478550.1	recombinase RecA	Machinery gene

Sequence

Protein

• Length: 329 a.a.
• Molecular weight: 37488.32 Da
• Isoelectric Point: 4.6433

>NTDB_id=387309 FOB75_RS15730 WP_025632114.1 3089638..3090627(+) (rpoS) [Vibrio parahaemolyticus strain FDAARGOS_667]
MSISNTVSKVEEFEYDNASETTIDNELGKSSSTTEGKTAVREEFDASSKSLDATQLYLGEIGFSPLLTAEEEVLYARRAL
RGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRT
IRLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVEDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDANNS
DPEVSTQDDDIKSSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGREIGLTRERVRQIQVEGLRRLREILIKQGLNM
ENLFNVEDD

Nucleotide

• Length: 990 bp

>NTDB_id=387309 FOB75_RS15730 WP_025632114.1 3089638..3090627(+) (rpoS) [Vibrio parahaemolyticus strain FDAARGOS_667]
ATGAGTATCAGCAACACAGTATCCAAAGTTGAAGAGTTTGAATACGACAATGCGTCAGAGACGACCATTGATAACGAACT
CGGAAAATCATCATCTACTACCGAAGGCAAAACAGCTGTCCGTGAAGAGTTTGACGCGAGCAGTAAAAGCCTAGACGCAA
CTCAATTGTATCTAGGTGAAATTGGCTTCTCACCTCTACTTACTGCTGAAGAAGAAGTCCTTTACGCCCGCAGAGCATTG
CGCGGTGATGAAGCGGCTCGTAAGCGCATGATCGAAAGTAACTTGCGTTTAGTAGTAAAAATCTCTCGTCGGTACAGCAA
CCGTGGCCTAGCGCTACTCGATCTTATTGAAGAAGGTAACCTCGGTTTGATCCGAGCGGTTGAAAAATTCGATCCAGAAA
GAGGCTTCCGTTTCTCAACTTACGCAACATGGTGGATCCGTCAAACGATCGAACGTGCGTTGATGAACCAAACTCGCACC
ATTCGCTTGCCTATTCATGTCGTGAAAGAGCTGAACATTTATCTGCGTACTGCGCGTGAACTTTCTCAAAAGCTCGATCA
TGAACCAACGGCAGAAGAAATTGCTGCTCAACTAGATATACCAGTAGAAGATGTCAGCAAAATGCTGCGTCTTAACGAGC
GTATTAGCTCCGTTGATACCCCAATTGGTGGTGACGGTGAAAAAGCGCTTCTGGATATTATTCCTGACGCAAACAACTCT
GATCCAGAAGTGTCGACTCAAGATGATGACATCAAATCGTCTTTGATCCATTGGTTGGAAGAGTTGAATCCAAAACAAAA
AGAAGTACTTGCACGCCGTTTTGGTTTGCTTGGTTATGAGCCGTCTACGCTTGAAGAAGTGGGACGAGAGATTGGTCTTA
CTCGTGAGCGTGTACGTCAAATTCAAGTGGAGGGTTTACGTCGACTTCGTGAAATTCTAATTAAACAAGGCCTAAATATG
GAAAACTTGTTTAACGTCGAAGACGATTAA

Domains

Predicted by InterproScan.

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (52-85)

• Sigma-70, region 4 (Sigma70_r4) (258-311)

• Sigma-70 region 2 (Sigma70_r2) (90-159)

• Sigma-70 region 3 (Sigma70_r3) (170-243)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	83.68	100	0.857