Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   FOB75_RS05960 Genome accession   NZ_CP044062
Coordinates   1138819..1140240 (+) Length   473 a.a.
NCBI ID   WP_021449193.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain FDAARGOS_667     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1133819..1145240
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOB75_RS05940 (FOB75_05940) - 1133878..1134630 (-) 753 WP_190970728.1 adenosylcobinamide-GDP ribazoletransferase -
  FOB75_RS05945 (FOB75_05945) cobT 1134675..1135718 (-) 1044 WP_025553309.1 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase -
  FOB75_RS05950 (FOB75_05950) - 1136402..1137097 (+) 696 WP_150334312.1 NAD(P)H-binding protein -
  FOB75_RS05955 (FOB75_05955) - 1137290..1138663 (+) 1374 WP_005486634.1 L-cystine transporter -
  FOB75_RS05960 (FOB75_05960) sbcB 1138819..1140240 (+) 1422 WP_021449193.1 exodeoxyribonuclease I Machinery gene
  FOB75_RS05965 (FOB75_05965) - 1140296..1140670 (+) 375 WP_005455074.1 CidA/LrgA family protein -
  FOB75_RS05970 (FOB75_05970) - 1140672..1141349 (+) 678 WP_005454891.1 LrgB family protein -
  FOB75_RS05975 (FOB75_05975) cdd 1141714..1142601 (+) 888 WP_005486660.1 cytidine deaminase -
  FOB75_RS05980 (FOB75_05980) purT 1142749..1143924 (+) 1176 WP_140216516.1 formate-dependent phosphoribosylglycinamide formyltransferase -
  FOB75_RS05985 (FOB75_05985) - 1144025..1144675 (-) 651 WP_150334313.1 thiopurine S-methyltransferase -

Sequence

Protein


Download         Length: 473 a.a.        Molecular weight: 54645.97 Da        Isoelectric Point: 4.9813

>NTDB_id=387280 FOB75_RS05960 WP_021449193.1 1138819..1140240(+) (sbcB) [Vibrio parahaemolyticus strain FDAARGOS_667]
MHQDNQPTFFFFDYETWGTNPAKDRPSQFAGVRTDENFNIIGEPLVMYCQLPADYLPSPEAALITGITPQKAMQEGLSEP
EFIAKIHAELSKPKTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQNGNSRWDLLDVLRACHALRPEGVEWPENEDGFT
SFKLEHLSVKNGIEHSNAHDAMADVIATIEMAKKVKAAQPKLFDYFFSMRHKRKLNELVDIVNMTPLMHVSGMLGRECQY
TSWIVPVAWHPTNNNAVITIDLAKDPQPILELSTEELHERLYTKREDLGDLLPVPVKLVHLNKCPILAPAKTLTAENAEN
IGIDRQKCLDNLALLRQHPEIREKLIGLFSIERQFEKSDDVDTQLYDGFFSPADRAAMDIIRETDPNNLAALDIEFDDKR
IKPLLFRYRARNFPSTLDEQEQRRWALHCREVFESQIEEYMLNLENLVHEHESDEKKIAILKSVYRYVESLAS

Nucleotide


Download         Length: 1422 bp        

>NTDB_id=387280 FOB75_RS05960 WP_021449193.1 1138819..1140240(+) (sbcB) [Vibrio parahaemolyticus strain FDAARGOS_667]
ATGCACCAAGATAATCAGCCCACTTTTTTCTTCTTTGACTACGAGACTTGGGGTACAAATCCCGCGAAAGATCGTCCAAG
CCAATTTGCTGGTGTTCGCACAGATGAAAACTTCAATATCATCGGCGAACCTCTGGTGATGTACTGCCAGCTACCTGCTG
ATTATCTACCTTCTCCGGAAGCTGCATTAATTACCGGCATTACGCCGCAAAAGGCGATGCAAGAGGGTCTATCCGAGCCT
GAGTTTATTGCTAAGATTCACGCCGAGTTATCGAAGCCAAAAACCACCAGCCTAGGCTATAACAGCATTCGTTTTGATGA
CGAAGTGACGCGTTACACCTGTTACCGCAACTTTATCGACCCATACGCGTGGAGCTGGCAAAACGGCAACTCGCGTTGGG
ACTTGCTCGATGTATTGCGTGCATGCCATGCGTTGCGTCCTGAAGGCGTAGAATGGCCAGAGAATGAAGACGGCTTCACC
AGTTTCAAGTTAGAACATTTATCGGTTAAAAATGGCATTGAGCACAGTAATGCGCACGACGCGATGGCTGACGTTATCGC
AACGATTGAGATGGCAAAGAAAGTCAAAGCCGCACAGCCAAAACTGTTCGATTACTTCTTCTCTATGCGCCACAAACGTA
AGCTGAATGAACTGGTTGATATTGTAAACATGACACCGCTGATGCATGTCTCAGGCATGTTAGGTCGCGAATGCCAATAC
ACCAGCTGGATTGTGCCTGTCGCGTGGCATCCAACGAATAACAATGCGGTTATTACGATTGATTTAGCCAAAGATCCGCA
GCCAATTCTTGAACTTTCAACCGAAGAGTTGCACGAACGTCTCTACACCAAGCGTGAAGACCTCGGCGACCTACTACCCG
TACCGGTGAAACTGGTTCACCTCAATAAGTGCCCTATTTTAGCACCAGCGAAAACGTTGACAGCGGAAAACGCAGAAAAC
ATCGGCATTGATCGTCAGAAGTGTCTCGATAATTTGGCACTACTTCGCCAGCACCCTGAGATTAGAGAAAAACTAATCGG
CTTGTTCTCTATCGAGCGTCAATTTGAAAAAAGCGATGATGTGGACACTCAACTTTACGATGGCTTCTTCTCTCCAGCTG
ACCGTGCAGCGATGGATATTATCCGCGAAACCGATCCAAACAATCTTGCTGCCTTAGATATCGAGTTTGACGATAAACGC
ATCAAACCGCTGCTATTCAGATACCGTGCTCGTAACTTCCCAAGCACTCTCGATGAGCAAGAGCAACGACGCTGGGCACT
TCATTGCCGAGAGGTATTTGAAAGCCAAATCGAAGAGTATATGCTGAATTTAGAAAACTTAGTTCACGAACATGAAAGTG
ACGAAAAGAAGATTGCAATATTAAAATCCGTTTACCGTTATGTAGAGAGCCTAGCCTCCTAA

Domains

Predicted by InterproScan.

Exonuclease (RNase_T)

(11-190)

Exonuclease C-terminal (Exonuc_X-T_C)

(210-469)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

79.915

100

0.799

Multiple sequence alignment