Detailed information    

insolico Bioinformatically predicted

Overview


Name   kpsS   Type   Regulator
Locus tag   NMBG2136_RS00470 Genome accession   NC_017513
Coordinates   90117..91376 (+) Length   419 a.a.
NCBI ID   WP_002218525.1    Uniprot ID   Q93JT0
Organism   Neisseria meningitidis G2136     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context


Location: 85117..96376
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMBG2136_RS00450 (NMBG2136_0080) rfbB 85238..86320 (+) 1083 WP_002225918.1 dTDP-glucose 4,6-dehydratase -
  NMBG2136_RS00455 (NMBG2136_0081) rfbA 86383..87249 (+) 867 WP_002226897.1 glucose-1-phosphate thymidylyltransferase RfbA -
  NMBG2136_RS00460 (NMBG2136_0082) rfbC 87303..87842 (+) 540 WP_002220123.1 dTDP-4-dehydrorhamnose 3,5-epimerase -
  NMBG2136_RS00465 (NMBG2136_0083) - 87866..89980 (+) 2115 WP_002225929.1 capsular polysaccharide biosynthesis protein -
  NMBG2136_RS00470 (NMBG2136_0084) kpsS 90117..91376 (+) 1260 WP_002218525.1 capsule biosynthesis protein Regulator
  NMBG2136_RS00475 (NMBG2136_0085) - 91745..93151 (+) 1407 WP_002224757.1 SEL1-like repeat protein -
  NMBG2136_RS00480 (NMBG2136_0086) gltS 93369..94583 (+) 1215 WP_002216198.1 sodium/glutamate symporter -
  NMBG2136_RS00485 (NMBG2136_0087) - 94682..95698 (+) 1017 WP_014580723.1 lysozyme inhibitor LprI family protein -
  NMBG2136_RS00490 (NMBG2136_0088) - 95709..95906 (+) 198 WP_002225930.1 hypothetical protein -
  NMBG2136_RS14775 - 95924..96073 (+) 150 WP_017201169.1 hypothetical protein -

Sequence


Protein


Download         Length: 419 a.a.        Molecular weight: 48678.47 Da        Isoelectric Point: 8.6667

>NTDB_id=38726 NMBG2136_RS00470 WP_002218525.1 90117..91376(+) (kpsS) [Neisseria meningitidis G2136]
MKQTVLKNNLQNLLESAENILLLQGPVGDFFLRLADWLTANGKTVHKFNFNAGDDYFYPPTQAHTVVFNDNYDAFPEFLQ
EYITQHHIQAVVCFGDTRPYHVIAKRIANENQASFWAFEEGYFRPYYITLEKDGVNAFSPLPRRADFFLEQFPKLAQQEY
KAPTPVHGGFTPMAKNAIRYYIELFRNPRKYPDYIHHRAPNAGHYLKPWSLSILKRLNYYIEDIQIAKRVEAGKYGKFFI
VPLQVFNDSQVRIHCDFPSVRSFLLHVLSSFAEHAPADTNIIIKHHPMDRGFIDYWRDIKRFIKEHPELKGRVIYVHDVP
LPVFLRHGLGMVTINSTSGLSGLIHNMPVKVLGRAYYDIPGITDQNTLAEFWNHPTPPDKELFHAYRMYHLNVTQINGNF
YSQVFFPNKNTSDSSTPTT

Nucleotide


Download         Length: 1260 bp        

>NTDB_id=38726 NMBG2136_RS00470 WP_002218525.1 90117..91376(+) (kpsS) [Neisseria meningitidis G2136]
ATGAAACAGACCGTCCTCAAAAATAACCTGCAAAACCTGCTTGAAAGCGCAGAAAATATCCTGCTGCTTCAAGGCCCTGT
CGGCGATTTTTTTCTGCGCCTTGCCGACTGGCTGACTGCAAACGGCAAAACCGTACATAAATTCAACTTTAATGCAGGCG
ACGACTATTTTTATCCGCCCACTCAAGCGCATACCGTTGTTTTTAACGACAACTACGATGCCTTTCCTGAGTTTTTGCAA
GAATACATCACTCAACATCACATCCAGGCCGTTGTCTGCTTTGGCGACACACGCCCTTATCACGTCATTGCAAAACGCAT
TGCAAACGAAAACCAAGCCAGTTTCTGGGCGTTTGAAGAAGGCTATTTCCGCCCCTACTACATCACCTTAGAAAAAGACG
GCGTCAACGCATTTTCCCCGTTGCCGCGCCGTGCCGACTTTTTTCTTGAACAATTCCCTAAGCTTGCCCAGCAAGAATAT
AAAGCGCCAACGCCGGTACACGGCGGTTTTACGCCCATGGCAAAAAACGCTATCCGTTACTATATCGAGTTGTTCCGCAA
TCCACGCAAATACCCCGACTACATCCACCACCGCGCACCCAATGCCGGCCATTACCTTAAACCGTGGTCGCTCTCCATCC
TCAAGCGTTTGAACTACTATATTGAAGACATCCAAATCGCCAAACGTGTGGAAGCAGGCAAATACGGCAAGTTTTTTATT
GTTCCCTTACAGGTATTCAACGACAGCCAAGTCCGTATCCATTGCGACTTTCCCAGCGTCCGCAGCTTCCTGCTCCATGT
TTTGAGTTCATTTGCCGAGCACGCGCCTGCCGATACCAACATCATCATCAAGCATCATCCTATGGACCGCGGCTTTATCG
ACTACTGGCGCGACATTAAACGCTTTATCAAAGAACACCCCGAACTCAAAGGCCGTGTGATTTATGTCCATGATGTCCCC
CTGCCCGTTTTCCTGCGCCACGGTCTCGGCATGGTTACCATCAACAGCACCAGCGGCCTGTCCGGACTGATTCACAATAT
GCCAGTTAAGGTTCTCGGCCGTGCCTATTATGATATTCCCGGCATTACTGACCAAAATACCTTGGCAGAATTTTGGAATC
ATCCGACACCGCCTGACAAAGAGCTGTTCCATGCCTACCGAATGTACCACCTCAACGTGACCCAAATTAACGGCAACTTC
TACAGTCAGGTCTTTTTTCCTAACAAAAACACATCCGACTCTTCCACACCAACAACCTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB Q93JT0

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kpsS Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

38.579

94.033

0.363


Multiple sequence alignment