Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   FOB29_RS20810 Genome accession   NZ_CP044059
Coordinates   4438720..4440078 (+) Length   452 a.a.
NCBI ID   WP_032955586.1    Uniprot ID   -
Organism   Bordetella hinzii strain FDAARGOS_621     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4433720..4445078
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOB29_RS20785 (FOB29_20785) hpnD 4434189..4435052 (-) 864 WP_048939932.1 presqualene diphosphate synthase HpnD -
  FOB29_RS20790 (FOB29_20790) hpnC 4435054..4435875 (-) 822 WP_029579341.1 squalene synthase HpnC -
  FOB29_RS20795 (FOB29_20795) alr 4435972..4437102 (+) 1131 WP_048939933.1 alanine racemase -
  FOB29_RS20800 (FOB29_20800) - 4437219..4437935 (+) 717 WP_029579343.1 SDR family oxidoreductase -
  FOB29_RS20805 (FOB29_20805) - 4437948..4438547 (-) 600 WP_223850506.1 hypothetical protein -
  FOB29_RS20810 (FOB29_20810) radA 4438720..4440078 (+) 1359 WP_032955586.1 DNA repair protein RadA Machinery gene
  FOB29_RS20815 (FOB29_20815) - 4440139..4440909 (+) 771 WP_029579346.1 sulfite exporter TauE/SafE family protein -
  FOB29_RS20820 (FOB29_20820) - 4441069..4441293 (+) 225 WP_029579347.1 hypothetical protein -
  FOB29_RS20825 (FOB29_20825) - 4441362..4442753 (-) 1392 WP_029579348.1 MATE family efflux transporter -
  FOB29_RS20830 (FOB29_20830) - 4442750..4444480 (-) 1731 WP_029579349.1 glycosyltransferase family 39 protein -
  FOB29_RS20835 (FOB29_20835) - 4444633..4444896 (-) 264 WP_029579350.1 type B 50S ribosomal protein L31 -

Sequence

Protein


Download         Length: 452 a.a.        Molecular weight: 47939.13 Da        Isoelectric Point: 6.9549

>NTDB_id=387245 FOB29_RS20810 WP_032955586.1 4438720..4440078(+) (radA) [Bordetella hinzii strain FDAARGOS_621]
MAKSRTVYVCAECGGTSLKWQGKCPHCAAWNTLEETVESSAPAAGHRYAPLASSSPVRSLADIEARETPRQPTGLDEFDR
VLGGGLVEGAVVLIGGDPGIGKSTLLLQALASLSASVPVLYVTGEESAEQVALRARRLGLPTGAVNLLAEIRLEAIQAAV
SQQKPAVAVIDSIQTLYSGELTAAPGSVSQVRECAAQLTRLAKQTGIAIVMIGHVTKDGALAGPRVLEHIVDTVLYFEGD
THSSFRLVRAFKNRFGAVNELGVFAMTDRGLRGVANPSALFLSQHQDQVAGSCVMATQEGTRPMLVEIQALVDSSHAPNP
KRLTVGLESNRLAMLLAVMHRHAGVSTYDQDVFVNAVGGVRITEPAADLPVLLAIMSSLRDRPLPKGLIAFGEIGLAGEI
RPAPRGQERLREAAKLGFSIALIPKANAPRQAIEGLEIWAVDRLEEALDKLR

Nucleotide


Download         Length: 1359 bp        

>NTDB_id=387245 FOB29_RS20810 WP_032955586.1 4438720..4440078(+) (radA) [Bordetella hinzii strain FDAARGOS_621]
ATGGCTAAATCGCGAACCGTCTATGTGTGCGCCGAGTGTGGCGGCACCAGCTTGAAGTGGCAGGGCAAGTGTCCGCACTG
CGCCGCCTGGAACACCCTCGAAGAAACCGTCGAGTCGTCCGCGCCGGCGGCCGGCCACCGCTACGCGCCCCTGGCGTCCT
CCAGTCCCGTGCGCAGCCTGGCCGATATCGAGGCGCGCGAGACGCCGCGCCAGCCGACCGGGCTGGACGAATTCGACCGC
GTGCTGGGCGGCGGCCTGGTCGAAGGGGCCGTGGTGCTCATCGGTGGCGATCCCGGCATCGGCAAATCCACTTTGCTCCT
CCAGGCCCTGGCGTCGCTGTCGGCCAGCGTGCCGGTCCTCTATGTCACCGGCGAAGAGTCCGCCGAGCAAGTGGCCCTGC
GCGCCCGCCGCCTGGGCCTTCCGACCGGCGCGGTCAACCTGCTGGCCGAGATCCGGCTGGAGGCCATCCAGGCGGCGGTG
TCCCAGCAAAAGCCCGCCGTGGCCGTCATCGATTCCATCCAGACGCTCTACAGCGGCGAGCTGACGGCCGCGCCCGGATC
CGTCTCGCAGGTGCGCGAATGCGCCGCCCAGCTCACGCGGCTGGCCAAGCAGACCGGCATCGCCATCGTCATGATCGGCC
ACGTCACGAAGGACGGCGCCCTGGCCGGGCCGCGCGTGCTCGAGCACATCGTCGACACGGTGCTCTATTTCGAAGGCGAC
ACGCATTCGTCCTTCCGTCTGGTGCGGGCGTTCAAGAACCGCTTTGGCGCGGTCAACGAGCTGGGCGTGTTCGCCATGAC
GGACCGCGGTCTGCGCGGCGTGGCCAACCCCTCGGCGCTCTTCCTGTCGCAGCACCAGGACCAGGTGGCGGGCTCCTGCG
TCATGGCCACGCAGGAGGGCACGCGGCCCATGTTGGTCGAGATCCAGGCGTTGGTCGATAGCTCGCATGCGCCCAATCCC
AAGCGCCTGACGGTGGGTCTGGAGAGCAACCGCCTGGCCATGCTCCTGGCCGTCATGCACCGGCACGCCGGCGTCAGCAC
CTATGACCAGGATGTCTTTGTCAATGCCGTGGGCGGCGTGCGCATCACCGAGCCCGCGGCCGACCTGCCCGTCCTGCTGG
CCATCATGTCCTCGCTGCGCGACCGCCCCTTGCCCAAGGGCCTGATCGCCTTTGGCGAGATCGGCCTGGCCGGCGAGATC
CGGCCGGCGCCGCGCGGCCAGGAGCGGCTGCGCGAGGCGGCCAAGCTTGGATTCTCCATCGCTCTCATTCCCAAGGCCAA
TGCGCCGCGCCAGGCGATAGAAGGTCTGGAGATCTGGGCAGTGGACCGCCTGGAAGAAGCCTTGGACAAATTGCGCTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(80-219)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.011

100

0.493
  radA Streptococcus mitis SK321

46.593

100

0.469
  radA Streptococcus pneumoniae D39

46.272

100

0.467
  radA Streptococcus pneumoniae TIGR4

46.272

100

0.467
  radA Streptococcus pneumoniae R6

46.272

100

0.467
  radA Streptococcus pneumoniae Rx1

46.272

100

0.467
  radA Streptococcus mitis NCTC 12261

46.053

100

0.465

Multiple sequence alignment