Detailed information NTG0387229

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: HHJ32_RS04935
• Genome accession: NZ_CP051716
• Coordinates: 1026201..1027193 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain SCU-118
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1021201..1032193

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HHJ32_RS04905 (HHJ32_04915)	ispD	1021262..1021972 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
HHJ32_RS04910 (HHJ32_04920)	ispF	1021972..1022451 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
HHJ32_RS04915 (HHJ32_04925)	truD	1022448..1023497 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
HHJ32_RS04920 (HHJ32_04930)	surE	1023478..1024239 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
HHJ32_RS04925 (HHJ32_04935)	pcm	1024233..1024859 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
HHJ32_RS04930 (HHJ32_04940)	nlpD	1025044..1026138 (+)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
HHJ32_RS04935 (HHJ32_04945)	rpoS	1026201..1027193 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
HHJ32_RS04940 (HHJ32_04950)	ygbN	1027287..1028651 (-)	1365	WP_000104441.1	GntP family transporter	-
HHJ32_RS04945 (HHJ32_04955)	ygbM	1028740..1029516 (-)	777	WP_001136934.1	HPr family phosphocarrier protein	-
HHJ32_RS04950 (HHJ32_04960)	ygbL	1029521..1030159 (-)	639	WP_001278994.1	aldolase	-
HHJ32_RS04955 (HHJ32_04965)	otnK	1030156..1031418 (-)	1263	WP_000590403.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=387229 HHJ32_RS04935 WP_000081550.1 1026201..1027193(+) (rpoS) [Escherichia coli strain SCU-118]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=387229 HHJ32_RS04935 WP_000081550.1 1026201..1027193(+) (rpoS) [Escherichia coli strain SCU-118]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715