Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   FOB30_RS25340 Genome accession   NZ_CP044058
Coordinates   2402730..2404106 (-) Length   458 a.a.
NCBI ID   WP_006407723.1    Uniprot ID   -
Organism   Burkholderia multivorans strain FDAARGOS_622     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2397730..2409106
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOB30_RS25320 (FOB30_25320) cls 2398266..2399705 (+) 1440 WP_150331803.1 cardiolipin synthase -
  FOB30_RS25325 (FOB30_25325) - 2399743..2400222 (-) 480 WP_006402630.1 glutathione peroxidase -
  FOB30_RS25330 (FOB30_25330) - 2400358..2402289 (+) 1932 WP_006407721.1 ATP-binding cassette domain-containing protein -
  FOB30_RS25335 (FOB30_25335) - 2402328..2402594 (-) 267 WP_006407722.1 DUF2866 domain-containing protein -
  FOB30_RS25340 (FOB30_25340) radA 2402730..2404106 (-) 1377 WP_006407723.1 DNA repair protein RadA Machinery gene
  FOB30_RS25345 (FOB30_25345) alr 2404117..2405187 (-) 1071 WP_006402626.1 alanine racemase -
  FOB30_RS25350 (FOB30_25350) lplT 2405406..2406713 (+) 1308 WP_006407724.1 lysophospholipid transporter LplT -
  FOB30_RS25355 (FOB30_25355) thiD 2406772..2407581 (+) 810 WP_006407725.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  FOB30_RS25360 (FOB30_25360) - 2407600..2408583 (-) 984 WP_053297125.1 DUF1853 family protein -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 48739.22 Da        Isoelectric Point: 7.1657

>NTDB_id=387226 FOB30_RS25340 WP_006407723.1 2402730..2404106(-) (radA) [Burkholderia multivorans strain FDAARGOS_622]
MAKQKTVYVCSECGGQTPKWQGQCPSCQAWNTLVESVAESPSAHRFQSLAKRAPVQRLVDIEAADVPRFSTGIGEFDRVL
GGGLVAGGVVLIGGDPGIGKSTLLLQSLADIASERRALYISGEESAAQIALRAQRLALLEGAAPAAELKLLAEIQLEKIQ
AAIDAERPDVAVIDSIQTVYSEALTSAPGSVAQVRECAAQLTRIAKQSGTAIIMVGHVTKEGNLAGPRVLEHIVDTVLYF
EGDTHSSFRLVRAFKNRFGAVNELGVFAMTERGLRGVANPSALFLSQHEQVVPGSCVLVTQEGTRPLLVEIQALVDTAHV
PNPRRLAVGLEQNRLAMLLAVLHRHAGIACFDQDVFLNAVGGVKIAEPAADLAVLLAIHSSMRNKALPKGLIVFGEVGLA
GEIRPSPRGQERLREAAKLGFTTALIPKANAPKQAIEGLNVMAVERLEQAIDRVRGLE

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=387226 FOB30_RS25340 WP_006407723.1 2402730..2404106(-) (radA) [Burkholderia multivorans strain FDAARGOS_622]
GTGGCAAAACAGAAAACCGTCTATGTCTGCAGCGAGTGCGGCGGACAAACCCCGAAGTGGCAGGGGCAGTGCCCGTCGTG
CCAGGCCTGGAATACGCTCGTCGAATCGGTCGCCGAATCGCCGAGCGCCCATCGCTTCCAGTCGCTCGCGAAACGTGCGC
CCGTCCAGCGCCTCGTCGACATCGAAGCGGCCGACGTGCCGCGCTTCTCGACCGGGATCGGCGAATTCGATCGCGTGCTC
GGCGGCGGCCTCGTCGCGGGCGGCGTCGTGCTGATCGGCGGCGATCCGGGCATCGGCAAGTCGACGCTGCTGCTGCAGTC
GCTCGCGGACATCGCGAGCGAGCGGCGCGCGCTCTATATCAGCGGCGAGGAATCGGCCGCGCAGATCGCGTTGCGCGCGC
AACGGCTCGCGCTGCTCGAAGGTGCCGCGCCGGCCGCCGAGCTGAAGCTGCTGGCCGAGATCCAGCTCGAGAAGATCCAG
GCCGCGATCGACGCGGAGCGGCCCGACGTCGCGGTGATCGACTCGATCCAGACCGTCTACTCGGAGGCGCTGACCTCCGC
ACCGGGCTCGGTCGCGCAGGTGCGCGAGTGCGCGGCGCAGCTCACCCGCATCGCGAAACAGTCGGGTACCGCGATCATCA
TGGTCGGCCACGTGACGAAGGAGGGCAACCTCGCGGGCCCGCGCGTGCTCGAGCACATCGTCGACACGGTGCTGTACTTC
GAAGGCGATACGCACTCGTCGTTCCGGCTCGTGCGCGCGTTCAAGAACCGCTTCGGCGCGGTCAACGAACTCGGCGTGTT
CGCGATGACCGAGCGCGGGCTGCGCGGCGTCGCGAACCCGTCGGCGCTGTTCCTGTCGCAGCACGAGCAGGTCGTGCCCG
GCTCGTGCGTGCTCGTCACGCAGGAGGGCACGCGCCCGCTGCTCGTCGAAATCCAGGCGCTCGTCGACACTGCGCACGTG
CCGAATCCGCGCCGGCTCGCGGTTGGCCTCGAACAGAACCGGCTCGCGATGCTGCTCGCCGTGCTGCACCGGCATGCGGG
CATCGCGTGCTTCGATCAGGACGTGTTCCTGAACGCGGTGGGCGGCGTGAAGATCGCCGAGCCCGCGGCCGATCTCGCGG
TGCTGCTCGCGATTCACTCGTCGATGCGCAACAAGGCGTTGCCGAAGGGGCTGATCGTGTTCGGCGAAGTCGGTCTGGCC
GGCGAGATCCGCCCGTCGCCGCGCGGGCAGGAGCGCTTGCGCGAGGCCGCGAAGCTCGGCTTCACGACCGCGCTGATTCC
GAAGGCGAACGCGCCCAAGCAGGCGATCGAGGGGCTGAACGTGATGGCGGTCGAGCGGCTCGAGCAGGCGATCGACCGCG
TGCGCGGCCTCGAATGA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(75-222)

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(365-452)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.138

100

0.498
  radA Streptococcus pneumoniae Rx1

46.204

100

0.465
  radA Streptococcus pneumoniae D39

46.204

100

0.465
  radA Streptococcus pneumoniae R6

46.204

100

0.465
  radA Streptococcus pneumoniae TIGR4

46.204

100

0.465
  radA Streptococcus mitis SK321

46.578

98.908

0.461
  radA Streptococcus mitis NCTC 12261

46.358

98.908

0.459

Multiple sequence alignment