Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   HHJ35_RS09045 Genome accession   NZ_CP051714
Coordinates   1906970..1908397 (-) Length   475 a.a.
NCBI ID   WP_000980604.1    Uniprot ID   -
Organism   Escherichia coli strain SCU-122     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1901970..1913397
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HHJ35_RS09010 (HHJ35_09015) hisL 1902554..1902604 (-) 51 WP_001364200.1 his operon leader peptide -
  HHJ35_RS09015 (HHJ35_09020) yefM 1902887..1903138 (+) 252 WP_001259255.1 YoeB-YefM toxin-antitoxin system antitoxin YefM -
  HHJ35_RS09020 (HHJ35_09025) yoeB 1903135..1903389 (+) 255 WP_000767826.1 type II toxin-antitoxin system mRNA interferase toxin YoeB -
  HHJ35_RS09025 (HHJ35_09030) yeeZ 1903472..1904296 (+) 825 WP_000754737.1 SDR family oxidoreductase -
  HHJ35_RS09030 (HHJ35_09035) yeeY 1904342..1905271 (+) 930 WP_000803363.1 LysR substrate-binding domain-containing protein -
  HHJ35_RS09035 (HHJ35_09040) yoeI 1905486..1905548 (+) 63 WP_010723108.1 membrane protein YoeI -
  HHJ35_RS09040 (HHJ35_09045) plaP 1905538..1906896 (+) 1359 WP_000019194.1 putrescine/proton symporter PlaP -
  HHJ35_RS09045 (HHJ35_09050) sbcB 1906970..1908397 (-) 1428 WP_000980604.1 exodeoxyribonuclease I Machinery gene
  HHJ35_RS09050 (HHJ35_09055) dacD 1908606..1909772 (+) 1167 WP_001297905.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  HHJ35_RS09055 (HHJ35_09060) sbmC 1909891..1910364 (+) 474 WP_001105376.1 DNA gyrase inhibitor SbmC -
  HHJ35_RS09060 (HHJ35_09065) yeeA 1910562..1911620 (+) 1059 WP_001200890.1 FUSC family protein -
  HHJ35_RS09065 (HHJ35_09070) tmaR 1911792..1912121 (+) 330 WP_000450409.1 DUF496 family protein -
  HHJ35_RS09070 (HHJ35_09075) - 1912222..1912404 (-) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  HHJ35_RS09075 (HHJ35_09080) - 1912458..1912604 (+) 147 Protein_1795 transposase domain-containing protein -
  HHJ35_RS09080 (HHJ35_09085) - 1912893..1912973 (-) 81 Protein_1796 hypothetical protein -
  HHJ35_RS09085 (HHJ35_09090) yeeW 1913019..1913213 (-) 195 WP_000988601.1 DUF5983 family protein -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54442.73 Da        Isoelectric Point: 5.4720

>NTDB_id=387159 HHJ35_RS09045 WP_000980604.1 1906970..1908397(-) (sbcB) [Escherichia coli strain SCU-122]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSENVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=387159 HHJ35_RS09045 WP_000980604.1 1906970..1908397(-) (sbcB) [Escherichia coli strain SCU-122]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCTCGGGCGAAAGGAGAAAAC
GAAGCCGCATTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAGCTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAGCCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTACTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTAAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGAGAACGTGGATGCACAGCTTTATAATGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAACTGTTGTTCAATTATCGAGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTGCAGGGCTACGCTGATGAATTGCAGATGCTGGCACAACAGT
ATGCCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTGA

Domains

Predicted by InterProScan.

Exonuclease C-terminal (ExoI_SH3)

(212-472)

Exonuclease (RNase_T)

(13-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.936

98.947

0.583